Ppnr MGI Mouse Gene Detail - MGI:1349458 - per-pentamer repeat gene

Sequence Map

Chr19:55830104-55834329 bp, + strand
From Ensembl annotation of GRCm39
View this region in JBrowse
Genome Browsers

Ensembl | UCSC | NCBI

For selected strains:

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1349458	lncRNA gene	Chr19:55830104-55834329 (+)
129S1/SvImJ	ENSMUSG00200015152	lncRNA gene	Chr19:52531585-52535810 (+)
A/J	ENSMUSG00195002571	lncRNA gene	Chr19:52706898-52711119 (+)
AKR/J	ENSMUSG00220017985	lncRNA gene	Chr19:52457728-52461988 (+)
BALB/cJ	ENSMUSG00180020114	lncRNA gene	Chr19:52946005-52950226 (+)
C3H/HeJ	ENSMUSG00175022648	lncRNA gene	Chr19:52481825-52486049 (+)
C57BL/6NJ	ENSMUSG00215026125	lncRNA gene	Chr19:52566059-52570281 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0034479	sense intronic lncRNA gene	Chr19:52317289-52321390 (+)
CAST/EiJ	ENSTCUG00005015809	lncRNA gene	Chr19:52116630-52120678 (+)
CBA/J	ENSMUSG00210021336	lncRNA gene	Chr19:52561174-52565400 (+)
DBA/2J	ENSMUSG00185028752	lncRNA gene	Chr19:53059917-53064141 (+)
FVB/NJ	ENSMUSG00205003666	lncRNA gene	Chr19:51941716-51945958 (+)
JF1/MsJ	ENSUMUG00000041260	lncRNA gene	Chr19:53243863-53247919 (+)
LP/J	ENSMUSG00230028026	lncRNA gene	Chr19:53813088-53817309 (+)
NOD/ShiLtJ	ENSMUSG00190013621	lncRNA gene	Chr19:52434041-52438262 (+)
NZO/HlLtJ	ENSMUSG00225025538	lncRNA gene	Chr19:57418799-57423020 (+)
PWK/PhJ	ENSLUMG00010019004	lncRNA gene	Chr19:52301096-52305115 (+)
SPRET/EiJ	ENSMSPG00010003560	lncRNA gene	Chr19:52162008-52165978 (+)
WSB/EiJ	ENSIUOG00005025980	lncRNA gene	Chr19:51919475-51923700 (+)

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Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.

Biological Process

carbohydrate derivative metabolism	cell differentiation	cell population proliferation	cellular component organization	DNA-templated transcription	establishment of localization	homeostatic process	immune system process	lipid metabolic process	programmed cell death	protein metabolic process	response to stimulus	signaling	system development

Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.

Click cells to view annotations.

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Expression Overview

GXD's primary emphasis is on endogenous gene expression during development. Click on grid cells to view annotations.

Blue cells = expressed in wild-type.
Gray triangles = other expression annotations only
(e.g. absence of expression or data from mutants).

early conceptus	embryo ectoderm	embryo endoderm	embryo mesoderm	embryo mesenchyme	extraembryonic component	alimentary system	auditory system	branchial arches	cardiovascular system	connective tissue	endocrine system	exocrine system	hemolymphoid system	integumental system	limbs	liver and biliary system	musculoskeletal system	nervous system	olfactory system	reproductive system	respiratory system	urinary system	visual system

Click cells to view annotations.

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			Length	Strain/Species	Flank
genomic	ENSMUSG00000099746	Ensembl Gene Model \| MGI Sequence Detail	4226	C57BL/6J	± kb
transcript	ENSMUST00000190974	Ensembl \| MGI Sequence Detail	3525	Not Applicable
polypeptide	Q78DZ5	UniProt \| EBI \| MGI Sequence Detail	133	Not Applicable

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Summaries

All 14

Developmental Gene Expression 1

Gene Ontology 1
Earliest

J:51738 Ishida N, et al., Molecular cloning of a gene under control of the circadian clock and light in the rodent SCN. Brain Res Mol Brain Res. 1994 Oct;26(1-2):197-206
Latest

J:190322 Archambaud C, et al., Impact of lactobacilli on orally acquired listeriosis. Proc Natl Acad Sci U S A. 2012 Oct 9;109(41):16684-9

Contributing Projects: Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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