Tuba-rs1 Pseudogene Detail

Summary

• Symbol
  Tuba-rs1
• Name
  tubulin alpha, related sequence 1
• Synonyms
  alphaTT1, testicular alpha tubulin

• Feature Type
  pseudogene
• IDs
  MGI:1349435
  NCBI Gene: 100416145
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr17:30396449-30397764 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 17, 15.61 cM, cytoband B1
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  117 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1349435	pseudogene	Chr17:30396407-30397764 (+)
129S1/SvImJ	ENSMUSG00200054046	pseudogene	Chr17:26051239-26052683 (+)
A/J	ENSMUSG00195054669	pseudogene	Chr17:26881439-26882883 (+)
AKR/J	ENSMUSG00220053866	pseudogene	Chr17:25923541-25924985 (+)
BALB/cJ	ENSMUSG00180052106	pseudogene	Chr17:26353847-26355291 (+)
C3H/HeJ	ENSMUSG00175054117	pseudogene	Chr17:25911698-25913142 (+)
C57BL/6NJ	ENSMUSG00215054675	pseudogene	Chr17:25912856-25914300 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005051547	pseudogene	Chr17:26641561-26643005 (+)
CBA/J	ENSMUSG00210051356	pseudogene	Chr17:25750127-25751571 (+)
DBA/2J	ENSMUSG00185054283	pseudogene	Chr17:27957376-27958820 (+)
FVB/NJ	ENSMUSG00205053755	pseudogene	Chr17:26222902-26224346 (+)
JF1/MsJ	ENSUMUG00000058063	pseudogene	Chr17:27437683-27439155 (+)
LP/J	ENSMUSG00230055244	pseudogene	Chr17:29476940-29478384 (+)
NOD/ShiLtJ	ENSMUSG00190054397	pseudogene	Chr17:25862233-25863705 (+)
NZO/HlLtJ	ENSMUSG00225055078	pseudogene	Chr17:31455944-31457388 (+)
PWK/PhJ	ENSLUMG00010053559	pseudogene	Chr17:25344993-25346437 (+)
SPRET/EiJ	ENSMSPG00010051126	pseudogene	Chr17:26628029-26629446 (+)
WSB/EiJ	ENSIUOG00005052090	pseudogene	Chr17:26631012-26632456 (+)

Homology

• Gene Tree
  Tuba-rs1
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000117974 (Evidence)
• NCBI Gene
  100416145

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000117974	Ensembl Gene Model | MGI Sequence Detail	1316	C57BL/6J
transcript	ENSMUST00000238030	Ensembl | MGI Sequence Detail	1316	Not Applicable
polypeptide	Q62362	UniProt | EBI | MGI Sequence Detail	199	Not Applicable

Protein
Information

• UniProt
  1 Sequence
• InterPro Domains
  IPR002452 Alpha tubulin
  IPR000217 Tubulin
  IPR023123 Tubulin, C-terminal
  IPR018316 Tubulin/FtsZ, 2-layer sandwich domain
  IPR008280 Tubulin/FtsZ, C-terminal
  IPR037103 Tubulin/FtsZ-like, C-terminal domain

Molecular
Reagents

• 
  

  Microarray probesets 3

References

• Summaries
  All 9
• Earliest
  J:51743 Hecht NB, et al., Localization of a highly divergent mammalian testicular alpha tubulin that is not detectable in brain. Mol Cell Biol. 1988 Feb;8(2):996-1000