Ube2l3-ps1 Pseudogene Detail

Summary

• Symbol
  Ube2l3-ps1
• Name
  ubiquitin-conjugating enzyme E2L 3, pseudogene 1
• Synonyms
  Gm38517, Ubce7-ps1, UbcM4

• Feature Type
  pseudogene
• IDs
  MGI:1347022
  NCBI Gene: 26463
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr3:35600043-35600478 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, 17.07 cM
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  183 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1347022	pseudogene	Chr3:35600024-35600697 (+)
129S1/SvImJ	ENSMUSG00200006186	pseudogene	Chr3:32334004-32334439 (+)
A/J	ENSMUSG00195001483	pseudogene	Chr3:32318592-32319027 (+)
AKR/J	ENSMUSG00220000912	pseudogene	Chr3:32360974-32361409 (+)
BALB/cJ	ENSMUSG00180002786	pseudogene	Chr3:32453644-32454079 (+)
C3H/HeJ	ENSMUSG00175003606	pseudogene	Chr3:32348752-32349187 (+)
C57BL/6NJ	ENSMUSG00215001663	pseudogene	Chr3:32727676-32728111 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0010799	pseudogene	Chr3:30409531-30409932 (+)
CAST/EiJ	ENSTCUG00005001137	pseudogene	Chr3:32180041-32180465 (+)
CBA/J	ENSMUSG00210001792	pseudogene	Chr3:32396937-32397372 (+)
DBA/2J	ENSMUSG00185001613	pseudogene	Chr3:32647695-32648130 (+)
FVB/NJ	ENSMUSG00205000872	pseudogene	Chr3:31821257-31821690 (+)
JF1/MsJ	ENSUMUG00000000737	pseudogene	Chr3:32079180-32079613 (+)
LP/J	ENSMUSG00230024657	pseudogene	Chr3:34576975-34577410 (+)
NOD/ShiLtJ	ENSMUSG00190001452	pseudogene	Chr3:32642991-32643426 (+)
NZO/HlLtJ	ENSMUSG00225007351	pseudogene	Chr3:37194904-37195339 (+)
PWK/PhJ	ENSLUMG00010000764	pseudogene	Chr3:32129885-32130318 (+)
SPRET/EiJ	ENSMSPG00010000666	pseudogene	Chr3:32542041-32542475 (+)
WSB/EiJ	ENSIUOG00005013814	pseudogene	Chr3:32645765-32646200 (+)

Homology

• Gene Tree
  Ube2l3-ps1
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Radiation induced
  1
• Genomic Mutations
  1 involving Ube2l3-ps1
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24
• RefSeq
  1

• Ensembl
  ENSMUSG00000105040 (Evidence)
• NCBI Gene
  26463

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000105040	Ensembl Gene Model | MGI Sequence Detail	436	C57BL/6J
transcript	ENSMUST00000199777	Ensembl | MGI Sequence Detail	436	Not Applicable

Other
Accession IDs

MGI:5621402

References

• Summaries
  All 11

  Diseases 1

  Phenotypes 2
• Earliest
  J:57789 Moynihan TP, et al., Characterization of the mouse ubiquitin-conjugating enzyme gene UbcM4. Mamm Genome. 1999 Oct;10(10):977-82
• Latest
  J:302829 Lu J, et al., Mouse models for human hyperuricaemia: a critical review. Nat Rev Rheumatol. 2019 Jul;15(7):413-426

TSS for Ube2l3-ps1:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr28844	Chr3:35600029-35600032 (+)	-12 bp