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Ccl19 Gene Detail
Summary
  • Symbol
    Ccl19
  • Name
    C-C motif chemokine ligand 19
  • Synonyms
    CKb11, exodus-3, Gm2023, Scya19
  • Feature Type
    protein coding gene
  • IDs
    MGI:1346316
    NCBI Gene: 24047
  • Alliance
    gene page
Location &
Maps
more
  • Sequence Map
    Chr4:42754525-42756558 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 4, 22.44 cM
  • Mapping Data
    5 experiments
Strain
Comparison
more
  • SNPs within 2kb
    9 from dbSNP Build 142
  • Strain Annotations
    6
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1346316
 protein coding gene Chr4:42754525-42756577 (-)
129S1/SvImJ MGP_129S1SvImJ_G0028180
 protein coding gene Chr4:40065355-40066219 (-)
A/J MGP_AJ_G0028143
 protein coding gene Chr4:38253675-39337877 (-)
AKR/J no annotation
BALB/cJ no annotation
C3H/HeJ no annotation
C57BL/6NJ MGP_C57BL6NJ_G0028605
 protein coding gene Chr4:42337789-42338663 (-)
CAROLI/EiJ no annotation
CAST/EiJ no annotation
CBA/J no annotation
DBA/2J no annotation
FVB/NJ MGP_FVBNJ_G0027962
 protein coding gene Chr4:37499556-37503049 (-)
LP/J no annotation
NOD/ShiLtJ no annotation
NZO/HlLtJ no annotation
PWK/PhJ MGP_PWKPhJ_G0027054
 protein coding gene Chr4:38241528-38250857 (-)
SPRET/EiJ no annotation
WSB/EiJ no annotation



Homology
more
  • Human Ortholog
    CCL19, C-C motif chemokine ligand 19
  • Vertebrate Orthologs
    5
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    CCL19, C-C motif chemokine ligand 19
  • Synonyms
    CKb11, ELC, MIP-3b, MIP3B, SCYA19
  • Links
    NCBI Gene ID: 6363
    neXtProt AC: NX_Q99731
    UniProt: Q99731

  • Chr Location
    9p13.3; chr9:34689570-34691276 (-)  GRCh38
Human Diseases
less
  • References
    1 with disease annotations
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    5 phenotypes from 2 alleles in 3 genetic backgrounds
    1 phenotype from multigenic genotypes
    88 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Homozygous mutation of this gene results in reduced T cell numbers.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    81
  • GO References
    13
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    721
  • Tissues
    8
  • cDNA Data
    11
  • Literature Summary
    9
  • Comparison Matrix
    Gene Expression + Phenotype
    • Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic 24047 NCBI Gene Model | MGI Sequence Detail 2034 C57BL/6J ±  kb
    transcript NM_011888 RefSeq | MGI Sequence Detail 760 C57BL/6  
    polypeptide O70460 UniProt | EBI | MGI Sequence Detail 108 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    Molecular
    Reagents
    less
    • All nucleic 21
      Genomic 7
      cDNA 11
      Primer pair 2
      Other 1

      Microarray probesets 7
    Other
    Accession IDs
    less
    MGI:3779198, MGI:3779199, MGI:3780192
    References
    more
    • Summaries
      All 150
      Developmental Gene Expression 9
      Diseases 1
      Gene Ontology 13
      Phenotypes 88
    • Earliest
      J:15290 Nakano H, et al., Nonspecific augmentation of lymph node T cells and I-E-independent selective deletion of V beta 14+ T cells by Mtv-2 in the DDD mouse. Eur J Immunol. 1993 Oct;23(10):2434-9
    • Latest
      J:361347 Chen KY, et al., Inflammation switches the chemoattractant requirements for naive lymphocyte entry into lymph nodes. Cell. 2024 Dec 17;
    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
    Citing These Resources
    Funding Information
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    Send questions and comments to User Support.     		last database update
    03/25/2025
    MGI 6.24     		The Jackson Laboratory