Tsg101-ps Pseudogene Detail

Summary

• Symbol
  Tsg101-ps
• Name
  tumor susceptibility gene 101, pseudogene

• Feature Type
  pseudogene
• IDs
  MGI:1335078
  NCBI Gene: 22089
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr15:62852497-62853666 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 15, 26.90 cM, cytoband D1
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  59 from dbSNP Build 142
• Strain Annotations
  13

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1335078	pseudogene	Chr15:62852475-62853907 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0011192	pseudogene	Chr15:62357728-62358897 (+)
A/J	MGP_AJ_G0011182	pseudogene	Chr15:59933499-59934668 (+)
AKR/J	MGP_AKRJ_G0011142	pseudogene	Chr15:61604347-61605516 (+)
BALB/cJ	MGP_BALBcJ_G0011149	pseudogene	Chr15:60112565-60114492 (+)
C3H/HeJ	MGP_C3HHeJ_G0011049	pseudogene	Chr15:61719908-61721048 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0011447	pseudogene	Chr15:64713341-64714510 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	MGP_CBAJ_G0011030	pseudogene	Chr15:66906502-66907933 (+)
DBA/2J	MGP_DBA2J_G0011077	pseudogene	Chr15:59787365-59788536 (+)
FVB/NJ	MGP_FVBNJ_G0011077	pseudogene	Chr15:58840416-58842529 (+)
LP/J	MGP_LPJ_G0011168	pseudogene	Chr15:62241682-62242827 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0011071	pseudogene	Chr15:71996863-71997991 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0011422	pseudogene	Chr15:61999838-62002671 (+)
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Tsg101-ps
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  26 phenotype references
  

• All Mutations and Alleles
  10
• Chemically induced (other)
  3
• Radiation induced
  2
• Transposon induced
  5
• Genomic Mutations
  10 involving Tsg101-ps
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  18
• RefSeq
  1

• Ensembl
  ENSMUSG00000106988 (Evidence)
• NCBI Gene
  22089

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000106988	Ensembl Gene Model | MGI Sequence Detail	1170	C57BL/6J
transcript	ENSMUST00000201023	Ensembl | MGI Sequence Detail	1170	Not Applicable

Molecular
Reagents

• All nucleic 2

  Genomic 2

References

• Summaries
  All 31

  Diseases 1

  Phenotypes 26
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
• Latest
  J:285676 Suzuki A, et al., Genes and microRNAs associated with mouse cleft palate: A systematic review and bioinformatics analysis. Mech Dev. 2018 Apr;150:21-27

TSS for Tsg101-ps:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr131447	Chr15:62853002-62853028 (+)	518 bp