Igkv3-8 Pseudogene Detail

Summary

• Symbol
  Igkv3-8
• Name
  immunoglobulin kappa variable 3-8

• Feature Type
  pseudogenic gene segment
• IDs
  MGI:1330857
  NCBI Gene: 108010
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr6:70565859-70566436 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, 31.98 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  225 from dbSNP Build 142
• Strain Annotations
  11

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1330857	pseudogenic gene segment	Chr6:70565855-70566436 (+)
129S1/SvImJ	ENSMUSG00200012353	pseudogenic gene segment	Chr6:67468894-67469471 (+)
A/J	ENSMUSG00195045210	pseudogenic gene segment	Chr6:67230865-67231442 (+)
AKR/J	no annotation
BALB/cJ	ENSMUSG00180043939	pseudogenic gene segment	Chr6:67585937-67586514 (+)
C3H/HeJ	ENSMUSG00175014438	pseudogenic gene segment	Chr6:109866475-109867052 (-)
C57BL/6NJ	ENSMUSG00215044415	pseudogenic gene segment	Chr6:67558573-67559150 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	ENSMUSG00210043667	pseudogenic gene segment	Chr6:67383729-67384306 (+)
DBA/2J	ENSMUSG00185046750	pseudogenic gene segment	Chr6:67943774-67944351 (+)
FVB/NJ	ENSMUSG00205014719	pseudogenic gene segment	Chr4:90147018-90147595 (-)
JF1/MsJ	no annotation
LP/J	ENSMUSG00230025108	pseudogenic gene segment	Chr6:69064004-69064581 (+)
NOD/ShiLtJ	no annotation
NZO/HlLtJ	ENSMUSG00225020124	pseudogenic gene segment	Chr6:71037903-71038480 (+)
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Igkv3-8
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  16
• RefSeq
  1

• Ensembl
  ENSMUSG00000104760 (Evidence)
• NCBI Gene
  108010

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000104760	Ensembl Gene Model | MGI Sequence Detail	578	C57BL/6J
transcript	ENSMUST00000197635	Ensembl | MGI Sequence Detail	339	Not Applicable

Molecular
Reagents

• All nucleic 6

  Genomic 6

References

• Summaries
  All 6
• Earliest
  J:47632 Kirschbaum T, et al., The 3' part of the immunoglobulin kappa locus of the mouse. Eur J Immunol. 1998 May;28(5):1458-66
• Latest
  J:164272 Giudicelli V, et al., IMGT/GENE-DB: a comprehensive database for human and mouse immunoglobulin and T cell receptor genes. Nucleic Acids Res. 2005 Jan 1;33(Database issue):D256-61