Igkv3-6 Pseudogene Detail

Summary

• Symbol
  Igkv3-6
• Name
  immunoglobulin kappa variable 3-6

• Feature Type
  pseudogenic gene segment
• IDs
  MGI:1330853
  NCBI Gene: 667936
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr6:70619389-70619963 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, 32.00 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  37 from dbSNP Build 142
• Strain Annotations
  14

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1330853	pseudogenic gene segment	Chr6:70619389-70620549 (+)
129S1/SvImJ	ENSMUSG00200012306	pseudogenic gene segment	Chr6:67522430-67523004 (+)
129S1/SvImJ	ENSMUSG00200014242	pseudogenic gene segment	Chr6:67433286-67433866 (+)
A/J	ENSMUSG00195045121	pseudogenic gene segment	Chr6:67284407-67284981 (+)
AKR/J	no annotation
BALB/cJ	ENSMUSG00180043878	pseudogenic gene segment	Chr6:67639477-67640051 (+)
C3H/HeJ	ENSMUSG00175014398	pseudogenic gene segment	Chr6:109812931-109813505 (-)
C57BL/6NJ	ENSMUSG00215044374	pseudogenic gene segment	Chr6:67612119-67612693 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	ENSMUSG00210043525	pseudogenic gene segment	Chr6:67437268-67437842 (+)
DBA/2J	ENSMUSG00185046668	pseudogenic gene segment	Chr6:67997311-67997885 (+)
FVB/NJ	ENSMUSG00205042886	pseudogenic gene segment	Chr6:66734951-66735525 (+)
JF1/MsJ	no annotation
LP/J	ENSMUSG00230024593	pseudogenic gene segment	Chr6:69117542-69118116 (+)
NOD/ShiLtJ	no annotation
NZO/HlLtJ	ENSMUSG00225019908	pseudogenic gene segment	Chr6:71091436-71092010 (+)
PWK/PhJ	ENSLUMG00010023222	pseudogenic gene segment	Chr6:66315257-66315837 (+)
SPRET/EiJ	ENSMSPG00010029125	pseudogenic gene segment	Chr6:68250317-68250897 (+)
WSB/EiJ	no annotation

Homology

• Gene Tree
  Igkv3-6
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  19
• RefSeq
  1

• Ensembl
  ENSMUSG00000106667 (Evidence)
• NCBI Gene
  667936

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000106667	Ensembl Gene Model | MGI Sequence Detail	575	C57BL/6J
transcript	ENSMUST00000196007	Ensembl | MGI Sequence Detail	342	Not Applicable

Molecular
Reagents

• All nucleic 4

  Genomic 4

References

• Summaries
  All 6
• Earliest
  J:47632 Kirschbaum T, et al., The 3' part of the immunoglobulin kappa locus of the mouse. Eur J Immunol. 1998 May;28(5):1458-66
• Latest
  J:164272 Giudicelli V, et al., IMGT/GENE-DB: a comprehensive database for human and mouse immunoglobulin and T cell receptor genes. Nucleic Acids Res. 2005 Jan 1;33(Database issue):D256-61

TSS for Igkv3-6:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr56941	Chr6:70619347-70619369 (+)	-31 bp