Sprr2c-ps Pseudogene Detail

Summary

• Symbol
  Sprr2c-ps
• Name
  small proline-rich protein 2C, pseudogene
• Synonyms
  Sprr2c

• Feature Type
  pseudogene
• IDs
  MGI:1330351
  NCBI Gene: 20757
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr3:92233906-92234136 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, 40.14 cM
• Mapping Data
  3 experiments

Strain
Comparison

• SNPs within 2kb
  169 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1330351	pseudogene	Chr3:92233906-92234207 (+)
129S1/SvImJ	ENSMUSG00200040190	pseudogene	Chr3:89021465-89021765 (+)
A/J	ENSMUSG00195053891	pseudogene	Chr3:89031086-89031386 (+)
AKR/J	ENSMUSG00220052268	pseudogene	Chr3:88251892-88252192 (+)
BALB/cJ	ENSMUSG00180050291	pseudogene	Chr3:89196669-89196969 (+)
C3H/HeJ	ENSMUSG00175049948	pseudogene	Chr3:88968947-88969247 (+)
C57BL/6NJ	ENSMUSG00215050691	pseudogene	Chr3:89580286-89580586 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0010953	pseudogene	Chr3:86487939-86488239 (+)
CAST/EiJ	ENSTCUG00005049254	pseudogene	Chr3:89334721-89335021 (+)
CBA/J	ENSMUSG00210048805	pseudogene	Chr3:89084146-89084446 (+)
DBA/2J	ENSMUSG00185053881	pseudogene	Chr3:89287318-89287618 (+)
FVB/NJ	ENSMUSG00205051072	pseudogene	Chr3:88054603-88054903 (+)
JF1/MsJ	ENSUMUG00000053626	pseudogene	Chr3:88818516-88818815 (+)
LP/J	ENSMUSG00230036290	pseudogene	Chr3:91318958-91319258 (+)
NOD/ShiLtJ	ENSMUSG00190051528	pseudogene	Chr3:89415560-89415860 (+)
NZO/HlLtJ	ENSMUSG00225012645	pseudogene	Chr3:94168047-94168347 (+)
PWK/PhJ	ENSLUMG00010052884	pseudogene	Chr3:88886975-88887275 (+)
SPRET/EiJ	ENSMSPG00010050814	pseudogene	Chr3:89345900-89346210 (+)
WSB/EiJ	ENSIUOG00005051142	pseudogene	Chr3:89566480-89566780 (+)

Homology

• Gene Tree
  Sprr2c-ps
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Sprr2c-ps
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• Literature Summary
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24
• RefSeq
  1

• Ensembl
  ENSMUSG00000103221 (Evidence)
• NCBI Gene
  20757

Representative Sequences			Length	Strain/Species
genomic	20757	NCBI Gene Model | MGI Sequence Detail	231	C57BL/6J

Molecular
Reagents

• All nucleic 5

  Genomic 5

  
  

  Microarray probesets 1

References

• Summaries
  All 13

  Developmental Gene Expression 1

  Diseases 1

  Phenotypes 4
• Earliest
  J:52302 Song HJ, et al., Mouse Sprr2 genes: a clustered family of genes showing differential expression in epithelial tissues. Genomics. 1999 Jan 1;55(1):28-42
• Latest
  J:302829 Lu J, et al., Mouse models for human hyperuricaemia: a critical review. Nat Rev Rheumatol. 2019 Jul;15(7):413-426