Sprr2j-ps Pseudogene Detail

Summary

• Symbol
  Sprr2j-ps
• Name
  small proline-rich protein 2J, pseudogene
• Synonyms
  Sprr2j

• Feature Type
  pseudogene
  BioType Conflict
  
• IDs
  MGI:1330345
  NCBI Gene: 20764
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr3:92325394-92326703 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, 40.14 cM
• Mapping Data
  4 experiments

Strain
Comparison

• SNPs within 2kb
  171 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1330345	pseudogene	Chr3:92325389-92326703 (+)
129S1/SvImJ	ENSMUSG00200036325	protein coding gene	Chr3:89112957-89114271 (+)
A/J	ENSMUSG00195052274	protein coding gene	Chr3:89122597-89123911 (+)
AKR/J	ENSMUSG00220047515	protein coding gene	Chr3:88343398-88344712 (+)
BALB/cJ	ENSMUSG00180043370	protein coding gene	Chr3:89288152-89289466 (+)
C3H/HeJ	ENSMUSG00175047041	protein coding gene	Chr3:89060433-89061747 (+)
C57BL/6NJ	ENSMUSG00215048299	protein coding gene	Chr3:89671782-89673096 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0025264	protein coding gene	Chr3:86587483-86588797 (+)
CAST/EiJ	ENSTCUG00005043113	protein coding gene	Chr3:89442991-89444306 (+)
CBA/J	ENSMUSG00210040659	protein coding gene	Chr3:89175640-89176954 (+)
DBA/2J	ENSMUSG00185051159	protein coding gene	Chr3:89378817-89380131 (+)
FVB/NJ	ENSMUSG00205043286	protein coding gene	Chr3:88146084-88147398 (+)
JF1/MsJ	ENSUMUG00000019095	protein coding gene	Chr3:88917787-88919104 (+)
LP/J	ENSMUSG00230027618	protein coding gene	Chr3:91410447-91411761 (+)
NOD/ShiLtJ	ENSMUSG00190041095	protein coding gene	Chr3:89506274-89507588 (+)
NZO/HlLtJ	ENSMUSG00225009497	protein coding gene	Chr3:94259535-94260849 (+)
PWK/PhJ	ENSLUMG00010047977	protein coding gene	Chr3:88978508-88979822 (+)
SPRET/EiJ	no annotation
WSB/EiJ	ENSIUOG00005047941	protein coding gene	Chr3:89657181-89658495 (+)

Homology

• Gene Tree
  Sprr2j-ps
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  7 phenotype references
  

• All Mutations and Alleles
  5
• Chemically induced (other)
  1
• Radiation induced
  1
• Targeted
  3
• Genomic Mutations
  2 involving Sprr2j-ps
• Find Mice (IMSR)
  6 strains or lines available

Gene Ontology
(GO)
Classifications

• All GO Annotations
  1
• GO References
  1

Expression

• Assay Results
  597
• cDNA Data
  6
• Literature Summary
  1

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  30
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000027925 (Evidence)
• NCBI Gene
  20764

Representative Sequences			Length	Strain/Species
genomic	20764	NCBI Gene Model | MGI Sequence Detail	1310	C57BL/6J
transcript	NR_003185	RefSeq | MGI Sequence Detail	673	ZRU/MplStud
polypeptide	O70561	UniProt | EBI | MGI Sequence Detail	109	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 10

  Genomic 4

  cDNA 6

  
  

  Microarray probesets 3

References

• Summaries
  All 27

  Developmental Gene Expression 1

  Diseases 1

  Gene Ontology 1

  Phenotypes 7
• Earliest
  J:52302 Song HJ, et al., Mouse Sprr2 genes: a clustered family of genes showing differential expression in epithelial tissues. Genomics. 1999 Jan 1;55(1):28-42
• Latest
  J:302829 Lu J, et al., Mouse models for human hyperuricaemia: a critical review. Nat Rev Rheumatol. 2019 Jul;15(7):413-426

TSS for Sprr2j-ps:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr30294	Chr3:92325386-92325395 (+)	-3 bp
Tssr30295	Chr3:92325427-92325440 (+)	40 bp