Amd-ps1 Pseudogene Detail

Summary

• Symbol
  Amd-ps1
• Name
  S-adenosylmethionine decarboxylase, pseudogene 1
• Synonyms
  AMD3

• Feature Type
  pseudogene
• IDs
  MGI:1310005
  NCBI Gene: 11701
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  ChrX:153938191-153939184 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome X, 72.38 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  98 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1310005	pseudogene	ChrX:153937867-153941046 (+)
129S1/SvImJ	ENSMUSG00200033122	pseudogene	ChrX:130665785-130666778 (+)
A/J	ENSMUSG00195039027	pseudogene	ChrX:135771699-135772692 (+)
AKR/J	ENSMUSG00220036004	pseudogene	ChrX:127611315-127612308 (+)
BALB/cJ	ENSMUSG00180041057	pseudogene	ChrX:131141695-131142688 (+)
C3H/HeJ	ENSMUSG00175026867	pseudogene	ChrX:135711798-135712791 (+)
C57BL/6NJ	ENSMUSG00215029436	pseudogene	ChrX:131505175-131506168 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005034285	pseudogene	ChrX:133417817-133418817 (+)
CBA/J	ENSMUSG00210040268	pseudogene	ChrX:133016524-133017517 (+)
DBA/2J	ENSMUSG00185045421	pseudogene	ChrX:147982002-147982995 (+)
FVB/NJ	ENSMUSG00205028719	pseudogene	ChrX:131635269-131636262 (+)
JF1/MsJ	ENSUMUG00000043357	pseudogene	ChrX:168349998-168351045 (+)
LP/J	ENSMUSG00230013916	pseudogene	ChrX:154765360-154766353 (+)
NOD/ShiLtJ	ENSMUSG00190037299	pseudogene	ChrX:132159541-132160534 (+)
NZO/HlLtJ	no annotation
PWK/PhJ	ENSLUMG00010035925	pseudogene	ChrX:129444127-129445075 (+)
SPRET/EiJ	ENSMSPG00010019676	pseudogene	ChrX:134506191-134507182 (+)
WSB/EiJ	ENSIUOG00005026347	pseudogene	ChrX:132537526-132538519 (+)

Homology

• Gene Tree
  Amd-ps1
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000083823 (Evidence)
• NCBI Gene
  11701

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000083823	Ensembl Gene Model | MGI Sequence Detail	994	C57BL/6J
transcript	ENSMUST00000120127	Ensembl | MGI Sequence Detail	994	Not Applicable

Molecular
Reagents

• All nucleic 1

  Genomic 1

Other
Accession IDs

MGI:1202721

References

• Summaries
  All 6
• Earliest
  J:48430 Nishimura K, et al., Structure and activity of mouse S-adenosylmethionine decarboxylase gene promoters and properties of the encoded proteins. Biochem J. 1998 Jun 15;332(Pt 3):651-9

TSS for Amd-ps1:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr162417	ChrX:153937863-153937867 (+)	-326 bp