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Nctc1 Gene Detail
Summary
  • Symbol
    Nctc1
  • Name
    non-coding transcript 1
  • Synonyms
    Rhit1
Location &
Maps
more
  • Sequence Map
    Chr7:142098346-142112335 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 7, 87.96 cM
  • Mapping Data
    5 experiments
Strain
Comparison
more
  • SNPs within 2kb
    257 from dbSNP Build 142
  • Strain Annotations
    19
  • PCR
    1
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1306816
 lncRNA gene Chr7:142098346-142123675 (-)
129S1/SvImJ ENSMUSG00200047855
 lncRNA gene Chr7:128664722-128678714 (-)
A/J ENSMUSG00195041263
 lncRNA gene Chr7:133146776-133160767 (-)
AKR/J ENSMUSG00220036943
 lncRNA gene Chr7:126629000-126642994 (-)
BALB/cJ ENSMUSG00180041548
 lncRNA gene Chr7:129838183-129852169 (-)
C3H/HeJ ENSMUSG00175046284
 lncRNA gene Chr7:130567702-130581698 (-)
C57BL/6NJ ENSMUSG00215047431
 lncRNA gene Chr7:129834044-129848038 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0013825
 unclassified non-coding RNA gene Chr7:144745883-144759861 (-)
CAST/EiJ ENSTCUG00005051224
 lncRNA gene Chr7:133135802-133149765 (-)
CBA/J ENSMUSG00210031453
 lncRNA gene Chr7:130325625-130339618 (-)
DBA/2J ENSMUSG00185018738
 lncRNA gene Chr7:134604207-134618198 (-)
FVB/NJ ENSMUSG00205047805
 lncRNA gene Chr7:130246332-130260323 (-)
JF1/MsJ ENSUMUG00000049037
 lncRNA gene Chr7:139678911-139692940 (-)
LP/J ENSMUSG00230043075
 lncRNA gene Chr7:140767541-140781534 (-)
NOD/ShiLtJ ENSMUSG00190030653
 lncRNA gene Chr7:130433103-130447095 (-)
NZO/HlLtJ ENSMUSG00225052735
 lncRNA gene Chr7:138976467-138990458 (-)
PWK/PhJ ENSLUMG00010048801
 lncRNA gene Chr7:128807004-128821020 (-)
SPRET/EiJ ENSMSPG00010044892
 lncRNA gene Chr7:130274083-130288050 (-)
WSB/EiJ ENSIUOG00005037966
 lncRNA gene Chr7:131196369-131210350 (-)



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    5 phenotype references
  • All Mutations and Alleles
    5
  • Endonuclease-mediated
    2
  • Radiation induced
    1
  • Targeted
    2
  • Genomic Mutations
    1 involving Nctc1
  • Find Mice (IMSR)
    6 strains or lines available
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    613
  • Tissues
    12
  • cDNA Data
    7
  • Literature Summary
    1
Sequences &
Gene Models
less
  • All Sequences
    33
  • RefSeq
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic 330677 NCBI Gene Model | MGI Sequence Detail 13990 C57BL/6J ±  kb
transcript NR_002452 RefSeq | MGI Sequence Detail 2106 ZRU/MplStud  
For the selected sequence
Molecular
Reagents
less
  • All nucleic 10
    Genomic 2
    cDNA 7
    Primer pair 1
References
more
  • Summaries
    All 21
    Developmental Gene Expression 1
    Phenotypes 5
  • Earliest
    J:43998 Zubair M, et al., Structure and expression of the mouse L23mrp gene downstream of the imprinted H19 gene: biallelic expression and lack of interaction with the H19 enhancers. Genomics. 1997 Oct 15;45(2):290-6
  • Latest
    J:326541 Cyagen Biosciences Inc., Cyagen Biosciences Website. 2022;
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
09/08/2026
MGI 6.24 		The Jackson Laboratory