Umpk-ps Pseudogene Detail

Summary

• Symbol
  Umpk-ps
• Name
  uridine monophosphate kinase, pseudogene
• Synonyms
  Gm5352

• Feature Type
  pseudogene
• IDs
  MGI:1278338
  NCBI Gene: 384845
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr8:76110430-76111256 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 8, 35.65 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  182 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1278338	pseudogene	Chr8:76110344-76112298 (+)
129S1/SvImJ	ENSMUSG00200026693	pseudogene	Chr8:70447727-70448553 (+)
A/J	ENSMUSG00195018360	pseudogene	Chr8:70823631-70824457 (+)
AKR/J	ENSMUSG00220023783	pseudogene	Chr8:70938174-70939000 (+)
BALB/cJ	ENSMUSG00180022593	pseudogene	Chr8:70655187-70656013 (+)
C3H/HeJ	ENSMUSG00175011900	pseudogene	Chr8:70750905-70751731 (+)
C57BL/6NJ	ENSMUSG00215022016	pseudogene	Chr8:70384370-70385196 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005040788	pseudogene	Chr8:70360594-70361419 (+)
CBA/J	ENSMUSG00210020793	pseudogene	Chr8:70671496-70672322 (+)
DBA/2J	ENSMUSG00185013481	pseudogene	Chr8:76835891-76836717 (+)
FVB/NJ	ENSMUSG00205043138	pseudogene	Chr8:69846066-69846891 (+)
JF1/MsJ	ENSUMUG00000043106	pseudogene	Chr8:79151818-79152644 (+)
LP/J	ENSMUSG00230030494	pseudogene	Chr8:80499769-80500595 (+)
NOD/ShiLtJ	ENSMUSG00190031461	pseudogene	Chr8:70727786-70728612 (+)
NZO/HlLtJ	ENSMUSG00225023448	pseudogene	Chr8:83839471-83840297 (+)
PWK/PhJ	ENSLUMG00010036284	pseudogene	Chr8:70558479-70559303 (+)
SPRET/EiJ	ENSMSPG00010025796	pseudogene	Chr8:72371452-72372278 (+)
WSB/EiJ	ENSIUOG00005016793	pseudogene	Chr8:71477768-71478594 (+)

Homology

• Gene Tree
  Umpk-ps
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Umpk-ps
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  1

• Ensembl
  ENSMUSG00000110543 (Evidence)
• NCBI Gene
  384845

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000110543	Ensembl Gene Model | MGI Sequence Detail	827	C57BL/6J
transcript	ENSMUST00000211897	Ensembl | MGI Sequence Detail	827	Not Applicable

Molecular
Reagents

• All nucleic 2

  Genomic 1

  Primer pair 1

  
  

  Microarray probesets 1

Other
Accession IDs

MGI:3643865

References

• Summaries
  All 9

  Phenotypes 2
• Earliest
  J:36993 Ropp PA, et al., Cloning and expression of a cDNA encoding uridine kinase from mouse brain. Arch Biochem Biophys. 1996 Dec 1;336(1):105-12
• Latest
  J:52606 Eddleston J, et al., Physical and transcriptional map of a 3-Mb region of mouse chromosome 1 containing the gene for the neural tube defect mutant loop-tail (Lp). Genomics. 1999 Mar 1;56(2):149-59