D5Ertd615e Gene Detail

Summary

• Symbol
  D5Ertd615e
• Name
  DNA segment, Chr 5, ERATO Doi 615, expressed
• Synonyms
  4930435H24Rik

• Feature Type
  lncRNA gene
• IDs
  MGI:1277236
  NCBI Gene: 52401
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr5:45166513-45581742 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, 24.50 cM, cytoband B3
• Mapping Data
  4 experiments

Strain
Comparison

• SNPs within 2kb
  10517 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1277236	lncRNA gene	Chr5:45166513-45581744 (-)
129S1/SvImJ	ENSMUSG00200001682	lncRNA gene	Chr5:40688608-41104299 (-)
A/J	ENSMUSG00195030551	lncRNA gene	Chr5:40078843-40483362 (-)
AKR/J	ENSMUSG00220002567	lncRNA gene	Chr5:40142349-40546853 (-)
BALB/cJ	ENSMUSG00180025168	lncRNA gene	Chr5:39906997-40311436 (-)
C3H/HeJ	ENSMUSG00175016489	lncRNA gene	Chr5:41879826-42284289 (-)
C57BL/6NJ	ENSMUSG00215001810	lncRNA gene	Chr5:40618198-41033841 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0006031	lincRNA gene	Chr5:39378162-39763648 (-)
CAST/EiJ	ENSTCUG00005025466	lncRNA gene	Chr5:40025347-40450812 (-)
CBA/J	ENSMUSG00210024351	lncRNA gene	Chr5:40839512-41243920 (-)
DBA/2J	ENSMUSG00185001609	lncRNA gene	Chr5:42717713-43122206 (-)
FVB/NJ	ENSMUSG00205020291	lncRNA gene	Chr5:39634933-40039436 (-)
JF1/MsJ	ENSUMUG00000002679	lncRNA gene	Chr5:47304350-47724902 (-)
LP/J	ENSMUSG00230002921	lncRNA gene	Chr5:47373234-47788930 (-)
NOD/ShiLtJ	ENSMUSG00190003276	lncRNA gene	Chr5:39914266-40318704 (-)
NZO/HlLtJ	ENSMUSG00225028496	lncRNA gene	Chr5:52522476-52927413 (-)
PWK/PhJ	ENSLUMG00010023408	lncRNA gene	Chr5:39947074-40378331 (-)
SPRET/EiJ	ENSMSPG00010014028	lncRNA gene	Chr5:41282682-41723188 (-)
WSB/EiJ	ENSIUOG00005019510	lncRNA gene	Chr5:42793007-43211684 (-)

Homology

• Gene Tree
  D5Ertd615e
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  18 phenotype references
  

• All Mutations and Alleles
  6
• Chemically induced (ENU)
  1
• Chemically induced (other)
  2
• Radiation induced
  2
• Spontaneous
  1
• Genomic Mutations
  6 involving D5Ertd615e
• Incidental Mutations
  Mutagenetix , APF
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  7

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  41
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000029092 (Evidence)
• NCBI Gene
  52401

Representative Sequences			Length	Strain/Species
genomic	52401	NCBI Gene Model | MGI Sequence Detail	415230	C57BL/6J
transcript	NR_131933	RefSeq | MGI Sequence Detail	3909	C57BL/6
polypeptide	Q9D5I1	UniProt | EBI | MGI Sequence Detail	136	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 8

  cDNA 7

  Primer pair 1

  
  

  Microarray probesets 4

Other
Accession IDs

MGI:1921225

References

• Summaries
  All 38

  Diseases 1

  Phenotypes 18
• Earliest
  J:5021 Batchelor AL, et al., A comparison of the mutagenic effectiveness of chronic neutron- and gamma-irradiation of mouse spermatogonia. Mutat Res. 1966 Jun;3(3):218-29
• Latest
  J:125425 Howell GR, et al., Mutation of a ubiquitously expressed mouse transmembrane protein (Tapt1) causes specific skeletal homeotic transformations. Genetics. 2007 Feb;175(2):699-707