Tcstv6a Gene Detail

Summary

• Symbol
  Tcstv6a
• Name
  Tcstv family member 6A
• Synonyms
  D13Ertd608e, Tcstv6

• Feature Type
  protein coding gene
• IDs
  MGI:1277199
  NCBI Gene: 52673
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr13:120297542-120308106 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 13, Syntenic
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  206 from dbSNP Build 142
• Strain Annotations
  16

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1277199	protein coding gene	Chr13:120297542-120308106 (+)
129S1/SvImJ	ENSMUSG00200003469	protein coding gene	Chr13:114364516-114365865 (+)
A/J	ENSMUSG00195000964	protein coding gene	Chr13:115050431-115051779 (+)
AKR/J	ENSMUSG00220012550	protein coding gene	Chr13:113465701-113467055 (+)
AKR/J	ENSMUSG00220012701	protein coding gene	Chr13:113350203-113351425 (+)
BALB/cJ	ENSMUSG00180010798	protein coding gene	Chr13:115462832-115464180 (+)
C3H/HeJ	no annotation
C57BL/6NJ	ENSMUSG00215000815	protein coding gene	Chr13:115638624-115639979 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	ENSMUSG00210017203	protein coding gene	Chr13:114976953-114978307 (+)
CBA/J	ENSMUSG00210017186	protein coding gene	Chr13:114861500-114862722 (+)
DBA/2J	ENSMUSG00185028649	protein coding gene	Chr13:118653981-118655203 (+)
DBA/2J	ENSMUSG00185028662	protein coding gene	Chr13:119030124-119031478 (-)
FVB/NJ	ENSMUSG00205001240	protein coding gene	Chr13:114664018-114665373 (-)
JF1/MsJ	no annotation
LP/J	ENSMUSG00230009553	protein coding gene	Chr13:129314733-129316089 (-)
NOD/ShiLtJ	ENSMUSG00190026992	protein coding gene	Chr13:25265016-25266364 (+)
NZO/HlLtJ	ENSMUSG00225030479	protein coding gene	Chr13:121014967-121016189 (+)
NZO/HlLtJ	ENSMUSG00225030891	protein coding gene	Chr13:121496211-121497565 (-)
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Tcstv6a
  

Expression

• Assay Results
  597
• cDNA Data
  8

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  32
• RefSeq
  2
• UniProt
  1

• Ensembl
  ENSMUSG00000095514 (Evidence)
• NCBI Gene
  52673

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000095514	Ensembl Gene Model | MGI Sequence Detail	10565	C57BL/6J
transcript	ENSMUST00000195797	Ensembl | MGI Sequence Detail	704	Not Applicable
polypeptide	ENSMUSP00000142107	Ensembl | MGI Sequence Detail	151	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 9

  cDNA 8

  Primer pair 1

  
  

  Microarray probesets 1

Other
Accession IDs

MGI:2145328, MGI:2145336, MGI:7537130, MGI:7641698

References

• Summaries
  All 13
• Earliest
  J:60984 Ko MS, et al., Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Development. 2000 Apr;127(8):1737-49
• Latest
  J:99680 The FANTOM Consortium and RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group), The Transcriptional Landscape of the Mammalian Genome. Science. 2005;309(5740):1559-1563