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D6Ertd527e Gene Detail
Summary
  • Symbol
    D6Ertd527e
  • Name
    DNA segment, Chr 6, ERATO Doi 527, expressed
  • Feature Type
    lncRNA gene
  • IDs
    MGI:1261919
    NCBI Gene: 52372
  • Alliance
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr6:87081729-87089979 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
  • Genetic Map
    Chromosome 6, 37.90 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    329 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1261919
lncRNA gene Chr6:87081728-87089979 (+)
129S1/SvImJ MGP_129S1SvImJ_G0030987
protein coding gene Chr6:88442458-88451826 (+)
A/J MGP_AJ_G0030953
protein coding gene Chr6:85025650-85033960 (+)
AKR/J MGP_AKRJ_G0030884
protein coding gene Chr6:87500661-87507972 (+)
BALB/cJ MGP_BALBcJ_G0030966
protein coding gene Chr6:85034774-85042479 (+)
C3H/HeJ MGP_C3HHeJ_G0030744
protein coding gene Chr6:96980436-96988566 (-)
C57BL/6NJ MGP_C57BL6NJ_G0031423
protein coding gene Chr6:90829934-90838676 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0028607
protein coding gene Chr6:83204622-83213384 (+)
CAST/EiJ MGP_CASTEiJ_G0030075
protein coding gene Chr6:87553469-87562320 (+)
CBA/J MGP_CBAJ_G0030650
protein coding gene Chr6:94388436-94396687 (+)
DBA/2J MGP_DBA2J_G0030806
protein coding gene Chr6:84332784-84341035 (+)
FVB/NJ MGP_FVBNJ_G0030759
protein coding gene Chr6:83515947-83523259 (+)
LP/J MGP_LPJ_G0030883
protein coding gene Chr6:88464058-88472054 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0030792
protein coding gene Chr6:98494262-98502513 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0031450
protein coding gene Chr6:87330835-87338844 (+)
PWK/PhJ MGP_PWKPhJ_G0029790
protein coding gene Chr6:83293196-83300912 (+)
SPRET/EiJ MGP_SPRETEiJ_G0029618
protein coding gene Chr6:86152951-86162783 (+)
WSB/EiJ MGP_WSBEiJ_G0030156
protein coding gene Chr6:87798751-87806854 (+)



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    2 phenotypes from 1 allele in 1 genetic background
    6 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Female mice homozygous for a null allele produce slightly smaller litters than wild-type mice.
Gene Ontology
(GO)
Classifications
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Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • cDNA Data
  • Comparison Matrix
  • Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic 52372 NCBI Gene Model | MGI Sequence Detail 8251 C57BL/6J ±  kb
    transcript NR_176826 RefSeq | MGI Sequence Detail 2220 ZRU/MplStud  
    polypeptide B2RXP9 UniProt | EBI | MGI Sequence Detail 462 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    • UniProt
      1 Sequence
    Molecular
    Reagents
    less
    • All nucleic 134
      cDNA 133
      Primer pair 1

      Microarray probesets 1
    Other
    Accession IDs
    less
    MGI:2141591
    References
    more
    • Summaries
      All 21
      Phenotypes 6
    • Earliest
      J:60984 Ko MS, et al., Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Development. 2000 Apr;127(8):1737-49
    • Latest
      J:337683 Petrzilek J, et al., De novo emergence, existence, and demise of a protein-coding gene in murids. BMC Biol. 2022 Dec 8;20(1):272

    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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    Funding Information
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    last database update
    06/12/2024
    MGI 6.13
    The Jackson Laboratory