Etohd2 Gene Detail

Summary

• Symbol
  Etohd2
• Name
  ethanol decreased 2

• Feature Type
  lncRNA gene
• IDs
  MGI:1261417
  NCBI Gene: 13996
• Alliance
  gene page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr13:59917780-59921494 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 13, 31.88 cM
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  52 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1261417	lncRNA gene	Chr13:59917311-59923221 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0015257	unclassified non-coding RNA gene	Chr13:59483734-59487443 (+)
A/J	MGP_AJ_G0015231	unclassified non-coding RNA gene	Chr13:57266972-57270687 (+)
AKR/J	MGP_AKRJ_G0015194	unclassified non-coding RNA gene	Chr13:58991703-58995418 (+)
BALB/cJ	MGP_BALBcJ_G0015193	unclassified non-coding RNA gene	Chr13:57528914-57532628 (+)
C3H/HeJ	MGP_C3HHeJ_G0015017	unclassified non-coding RNA gene	Chr13:58774228-58777939 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0015650	unclassified non-coding RNA gene	Chr13:61286839-61290554 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013392	unclassified non-coding RNA gene	Chr13:55153920-55157599 (+)
CAST/EiJ	MGP_CASTEiJ_G0014570	unclassified non-coding RNA gene	Chr13:58970537-58974203 (+)
CBA/J	MGP_CBAJ_G0014996	unclassified non-coding RNA gene	Chr13:63601234-63604949 (+)
DBA/2J	MGP_DBA2J_G0015089	unclassified non-coding RNA gene	Chr13:56808469-56812179 (+)
FVB/NJ	MGP_FVBNJ_G0015100	unclassified non-coding RNA gene	Chr13:56293111-56296821 (+)
LP/J	MGP_LPJ_G0015170	unclassified non-coding RNA gene	Chr13:59748955-59752670 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015127	unclassified non-coding RNA gene	Chr13:62897519-62901234 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0015689	unclassified non-coding RNA gene	Chr13:58585989-58589704 (+)
PWK/PhJ	MGP_PWKPhJ_G0014362	unclassified non-coding RNA gene	Chr13:56848648-56852377 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0014149	unclassified non-coding RNA gene	Chr13:57464524-57468014 (+)
WSB/EiJ	MGP_WSBEiJ_G0014673	unclassified non-coding RNA gene	Chr13:59030377-59034389 (+)

Homology

• Gene Tree
  Etohd2
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  1
• Gene trapped
  2
• Genomic Mutations
  1 involving Etohd2
• Find Mice (IMSR)
  4 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  5

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  33
• RefSeq
  1

• Ensembl
  ENSMUSG00000089875 (Evidence)
• NCBI Gene
  13996

Representative Sequences			Length	Strain/Species
genomic	13996	NCBI Gene Model | MGI Sequence Detail	3715	C57BL/6J
transcript	NR_015349	RefSeq | MGI Sequence Detail	3135	C57BL/6

Molecular
Reagents

• All nucleic 5

  cDNA 5

  
  

  Microarray probesets 1

Other
Accession IDs

MGI:2145431

References

• Summaries
  All 18

  Phenotypes 6
• Earliest
  J:182573 Roderick TH, Producing and detecting paracentric chromosomal inversions in mice. Mutat Res. 1971 Jan;11(1):59-69
• Latest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

TSS for Etohd2:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr120105	Chr13:59917742-59917810 (+)	-4 bp
Tssr4095	Chr13:59918339-59918345 (+)	562 bp