Prdx6-ps2 Pseudogene Detail

Summary

• Symbol
  Prdx6-ps2
• Name
  peroxiredoxin 6 pseudogene 2
• Synonyms
  Aop2-rs2, GPx*, Prdx6-rs2

• Feature Type
  pseudogene
• IDs
  MGI:1203519
  NCBI Gene: 384001
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr4:25307830-25308523 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 10.59 cM
• Mapping Data
  3 experiments

Strain
Comparison

• SNPs within 2kb
  134 from dbSNP Build 142
• Strain Annotations
  19
• PCR
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1203519	pseudogene	Chr4:25307777-25309139 (+)
129S1/SvImJ	ENSMUSG00200012856	pseudogene	Chr4:21965582-21966275 (+)
A/J	ENSMUSG00195000262	pseudogene	Chr4:22489261-22489954 (+)
AKR/J	ENSMUSG00220014787	pseudogene	Chr4:22253567-22254260 (+)
BALB/cJ	ENSMUSG00180000352	pseudogene	Chr4:22001064-22001757 (+)
C3H/HeJ	ENSMUSG00175002390	pseudogene	Chr4:22475444-22476137 (+)
C57BL/6NJ	ENSMUSG00215000862	pseudogene	Chr4:22092873-22093566 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0010499	pseudogene	Chr2:74970009-74970683 (+)
CAST/EiJ	ENSTCUG00005000472	pseudogene	Chr4:21958817-21959516 (+)
CBA/J	ENSMUSG00210004940	pseudogene	Chr4:22199590-22200283 (+)
DBA/2J	ENSMUSG00185000417	pseudogene	Chr4:22291165-22291858 (+)
FVB/NJ	ENSMUSG00205000570	pseudogene	Chr4:21787042-21787735 (+)
JF1/MsJ	ENSUMUG00000002879	pseudogene	Chr4:22244215-22244908 (+)
LP/J	ENSMUSG00230000617	pseudogene	Chr4:25551115-25551808 (+)
NOD/ShiLtJ	ENSMUSG00190000621	pseudogene	Chr4:22184471-22185164 (+)
NZO/HlLtJ	ENSMUSG00225001933	pseudogene	Chr4:29482543-29483236 (+)
PWK/PhJ	ENSLUMG00010007896	pseudogene	Chr4:21658118-21658811 (+)
SPRET/EiJ	ENSMSPG00010002747	pseudogene	Chr4:22350240-22350939 (+)
WSB/EiJ	ENSIUOG00005005451	pseudogene	Chr4:21935460-21936153 (+)

Homology

• Gene Tree
  Prdx6-ps2
  

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  26
• RefSeq
  2

• Ensembl
  ENSMUSG00000083737 (Evidence)
• NCBI Gene
  384001

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000083737	Ensembl Gene Model | MGI Sequence Detail	694	C57BL/6J
transcript	ENSMUST00000121989	Ensembl | MGI Sequence Detail	694	Not Applicable

Molecular
Reagents

• All nucleic 5

  Genomic 1

  cDNA 1

  Primer pair 3

Other
Accession IDs

MGI:1859818

References

• Summaries
  All 12
• Earliest
  J:54513 Munz B, et al., A novel type of glutathione peroxidase: expression and regulation during wound repair. Biochem J. 1997 Sep 1;326(Pt 2):579-85
• Latest
  J:89933 Kudo T, et al., Normal embryonic and germ cell development in mice lacking alpha 1,3-fucosyltransferase IX (Fut9) which show disappearance of stage-specific embryonic antigen 1. Mol Cell Biol. 2004 May;24(10):4221-8

TSS for Prdx6-ps2:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr1128	Chr4:25307773-25307784 (+)	-51 bp