D6Ertd474e Gene Detail

Summary

• Symbol
  D6Ertd474e
• Name
  DNA segment, Chr 6, ERATO Doi 474, expressed
• Synonyms
  1700001I24Rik

• Feature Type
  lncRNA gene
• IDs
  MGI:1196315
  NCBI Gene: 52285
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr6:143191614-143243605 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, 75.50 cM
• Mapping Data
  3 experiments

Strain
Comparison

• SNPs within 2kb
  1980 from dbSNP Build 142
• Strain Annotations
  28

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1196315	lncRNA gene	Chr6:143183106-143243605 (+)
129S1/SvImJ	ENSMUSG00200031766	protein coding gene	Chr6:140773123-140785455 (+)
129S1/SvImJ	ENSMUSG00200034157	lncRNA gene	Chr6:140733094-140784467 (+)
A/J	ENSMUSG00195008504	lncRNA gene	Chr6:139639625-139691005 (+)
A/J	ENSMUSG00195007986	protein coding gene	Chr6:139679666-139691993 (+)
AKR/J	ENSMUSG00220033852	lncRNA gene	Chr6:137866511-137917889 (+)
AKR/J	ENSMUSG00220031316	protein coding gene	Chr6:137906549-137918877 (+)
BALB/cJ	ENSMUSG00180015931	protein coding gene	Chr6:139807130-139819464 (+)
BALB/cJ	ENSMUSG00180018275	lncRNA gene	Chr6:139767087-139818476 (+)
C3H/HeJ	ENSMUSG00175033882	protein coding gene	Chr6:139706406-139718734 (+)
C3H/HeJ	ENSMUSG00175036357	lncRNA gene	Chr6:139666364-139717746 (+)
C57BL/6NJ	ENSMUSG00215024864	protein coding gene	Chr6:139878404-139890742 (+)
C57BL/6NJ	ENSMUSG00215030127	lncRNA gene	Chr6:139838370-139889754 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0006453	lincRNA gene	Chr6:141076554-141128491 (+)
CAST/EiJ	ENSTCUG00005037734	lncRNA gene	Chr6:140496350-140547753 (+)
CBA/J	ENSMUSG00210003729	protein coding gene	Chr6:139769060-139781392 (+)
CBA/J	ENSMUSG00210005475	lncRNA gene	Chr6:139729019-139780404 (+)
DBA/2J	ENSMUSG00185023724	lncRNA gene	Chr6:140379622-140430996 (+)
DBA/2J	ENSMUSG00185022307	protein coding gene	Chr6:140419660-140431984 (+)
FVB/NJ	ENSMUSG00205031881	lncRNA gene	Chr6:138748969-138799475 (+)
JF1/MsJ	ENSUMUG00000011057	lncRNA gene	Chr6:139040067-139091464 (+)
LP/J	no annotation
NOD/ShiLtJ	ENSMUSG00190006061	protein coding gene	Chr6:140239646-140251978 (+)
NOD/ShiLtJ	ENSMUSG00190006971	lncRNA gene	Chr6:140199606-140250990 (+)
NZO/HlLtJ	ENSMUSG00225013921	lncRNA gene	Chr6:144369569-144420951 (+)
NZO/HlLtJ	ENSMUSG00225013444	protein coding gene	Chr6:144409611-144421939 (+)
PWK/PhJ	ENSLUMG00010037170	lncRNA gene	Chr6:138122415-138179150 (+)
SPRET/EiJ	ENSMSPG00010016978	lncRNA gene	Chr6:142024426-142075144 (+)
WSB/EiJ	ENSIUOG00005023516	lncRNA gene	Chr6:140442223-140492699 (+)

Homology

• Gene Tree
  D6Ertd474e
  

Expression

• Assay Results
  602
• Tissues
  1
• cDNA Data
  14
• Literature Summary
  1

Images

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  57
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000072679 (Evidence)
• NCBI Gene
  52285

Representative Sequences			Length	Strain/Species
genomic	52285	NCBI Gene Model | MGI Sequence Detail	51992	C57BL/6J
transcript	NR_027803	RefSeq | MGI Sequence Detail	2761	ZRU/MplStud
polypeptide	Q3UT75	UniProt | EBI | MGI Sequence Detail	93	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 15

  cDNA 14

  Primer pair 1

  
  

  Microarray probesets 2

Other
Accession IDs

MGI:1923948, MGI:2141574

References

• Summaries
  All 19

  Developmental Gene Expression 1
• Earliest
  J:60984 Ko MS, et al., Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Development. 2000 Apr;127(8):1737-49
• Latest
  J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582

TSS for D6Ertd474e:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr59508	Chr6:143231692-143231710 (+)	40,087 bp
Tssr59509	Chr6:143231714-143231725 (+)	40,106 bp