H3f3a-ps1 Pseudogene Detail

Summary

• Symbol
  H3f3a-ps1
• Name
  H3.3 histone A, pseudogene 1
• Synonyms
  H3.3-like sequence MH321

• Feature Type
  pseudogene
• IDs
  MGI:1101782
  NCBI Gene: 15079
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  ChrX:100868121-100868530 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome X, 44.71 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  50 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1101782	pseudogene	ChrX:100868031-100868893 (+)
129S1/SvImJ	ENSMUSG00200039037	pseudogene	ChrX:82581678-82582087 (+)
A/J	ENSMUSG00195041247	pseudogene	ChrX:86336514-86336923 (+)
AKR/J	ENSMUSG00220038271	pseudogene	ChrX:81027297-81027706 (+)
BALB/cJ	ENSMUSG00180045090	pseudogene	ChrX:83046879-83047288 (+)
C3H/HeJ	ENSMUSG00175043935	pseudogene	ChrX:86707271-86707680 (+)
C57BL/6NJ	ENSMUSG00215046326	pseudogene	ChrX:83237490-83237899 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005042380	pseudogene	ChrX:84086825-84087234 (+)
CBA/J	ENSMUSG00210043256	pseudogene	ChrX:83478087-83478496 (+)
DBA/2J	ENSMUSG00185043799	pseudogene	ChrX:95921112-95921521 (+)
FVB/NJ	ENSMUSG00205041752	pseudogene	ChrX:82735791-82736200 (+)
JF1/MsJ	ENSUMUG00000043600	pseudogene	ChrX:116510764-116511173 (+)
LP/J	ENSMUSG00230044049	pseudogene	ChrX:102615186-102615595 (+)
NOD/ShiLtJ	ENSMUSG00190043636	pseudogene	ChrX:82632970-82633379 (+)
NZO/HlLtJ	ENSMUSG00225046507	pseudogene	ChrX:107703109-107703518 (+)
PWK/PhJ	ENSLUMG00010041093	pseudogene	ChrX:81777930-81778339 (+)
SPRET/EiJ	no annotation
WSB/EiJ	ENSIUOG00005043262	pseudogene	ChrX:83159541-83159950 (+)

Homology

• Gene Tree
  H3f3a-ps1
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000082284 (Evidence)
• NCBI Gene
  15079

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000082284	Ensembl Gene Model | MGI Sequence Detail	410	C57BL/6J
transcript	ENSMUST00000119546	Ensembl | MGI Sequence Detail	410	Not Applicable

Molecular
Reagents

• All nucleic 4

  Genomic 4

References

• Summaries
  All 7
• Earliest
  J:9050 Wellman SE, et al., Characterization of mouse H3.3-like histone genes. Gene. 1987;59(1):29-39
• Latest
  J:224673 Maehara K, et al., Tissue-specific expression of histone H3 variants diversified after species separation. Epigenetics Chromatin. 2015;8:35