H3f3a-ps2 Pseudogene Detail

Summary

• Symbol
  H3f3a-ps2
• Name
  H3.3 histone A, pseudogene 2
• Synonyms
  H3.3-like sequence MH921, histone H3.3 pseudogene, MH-921

• Feature Type
  pseudogene
• IDs
  MGI:1101758
  NCBI Gene: 15080
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr16:90911077-90911487 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 16, 52.44 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  67 from dbSNP Build 142
• Strain Annotations
  27

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1101758	pseudogene	Chr16:90910559-90911591 (-)
129S1/SvImJ	ENSMUSG00200038171	pseudogene	Chr16:87833302-87833712 (-)
A/J	ENSMUSG00195030963	pseudogene	Chr16:87595869-87596279 (-)
AKR/J	ENSMUSG00220016264	pseudogene	Chr16:87791813-87792223 (-)
BALB/cJ	ENSMUSG00180015280	pseudogene	Chr16:87669213-87669623 (-)
C3H/HeJ	ENSMUSG00175016185	pseudogene	Chr16:88006572-88006982 (-)
C57BL/6NJ	ENSMUSG00215033125	pseudogene	Chr16:87797658-87798068 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005020584	pseudogene	Chr16:87339202-87339612 (-)
CBA/J	ENSMUSG00210042897	pseudogene	Chr16:87898576-87898986 (-)
DBA/2J	ENSMUSG00185034297	pseudogene	Chr16:87856571-87856981 (-)
FVB/NJ	ENSMUSG00205025006	pseudogene	Chr16:87629018-87629428 (-)
JF1/MsJ	ENSUMUG00000044457	pseudogene	Chr4:101907060-101907470 (+)
JF1/MsJ	ENSUMUG00000043123	pseudogene	Chr16:87986630-87987040 (-)
LP/J	ENSMUSG00230034975	pseudogene	Chr16:90378796-90379206 (-)
NOD/ShiLtJ	ENSMUSG00190028793	pseudogene	Chr16:87830804-87831214 (-)
NZO/HlLtJ	ENSMUSG00225004915	pseudogene	Chr2:126002733-126003143 (-)
NZO/HlLtJ	ENSMUSG00225031149	pseudogene	Chr16:93503794-93504204 (-)
NZO/HlLtJ	ENSMUSG00225021688	pseudogene	Chr9:94156423-94156833 (+)
PWK/PhJ	ENSLUMG00010013821	pseudogene	Chr16:87622182-87622592 (-)
SPRET/EiJ	ENSMSPG00010044033	pseudogene	Chr11:56606572-56606982 (+)
SPRET/EiJ	ENSMSPG00010051645	pseudogene	Chr15:80425296-80425706 (-)
SPRET/EiJ	ENSMSPG00010031048	pseudogene	Chr16:88771077-88771487 (-)
SPRET/EiJ	ENSMSPG00010031948	pseudogene	Chr1:35078807-35079217 (+)
SPRET/EiJ	ENSMSPG00010034704	pseudogene	Chr8:82142318-82142728 (-)
SPRET/EiJ	ENSMSPG00010003797	pseudogene	Chr14:38929873-38930283 (-)
SPRET/EiJ	ENSMSPG00010047136	pseudogene	Chr4:126852684-126853094 (-)
WSB/EiJ	ENSIUOG00005020440	pseudogene	Chr16:87736113-87736523 (-)

Homology

• Gene Tree
  H3f3a-ps2
  

Human Diseases

• References
  4 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  65 phenotype references
  

• All Mutations and Alleles
  5
• Spontaneous
  1
• Targeted
  3
• Genomic Mutations
  5 involving H3f3a-ps2
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  32
• RefSeq
  1

• Ensembl
  ENSMUSG00000081176 (Evidence)
• NCBI Gene
  15080

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000081176	Ensembl Gene Model | MGI Sequence Detail	411	C57BL/6J
transcript	ENSMUST00000119544	Ensembl | MGI Sequence Detail	411	Not Applicable

Molecular
Reagents

• All nucleic 2

  Genomic 2

References

• Summaries
  All 73

  Diseases 4

  Phenotypes 65
• Earliest
  J:9050 Wellman SE, et al., Characterization of mouse H3.3-like histone genes. Gene. 1987;59(1):29-39
• Latest
  J:385727 Harada K, et al., Preventing Differentiation Towards Primitive Macrophages in Stem Cells With Down Syndrome. Immunology. 2026 Mar;177(3):596-612