Ccnd3-ps Pseudogene Detail

Summary

• Symbol
  Ccnd3-ps
• Name
  cyclin D3, pseudogene

• Feature Type
  pseudogene
• IDs
  MGI:1100505
  NCBI Gene: 626000
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr4:139072611-139073491 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 70.65 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  152 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1100505	pseudogene	Chr4:139071703-139073626 (-)
129S1/SvImJ	ENSMUSG00200047553	pseudogene	Chr4:132486700-132487580 (-)
A/J	ENSMUSG00195037297	pseudogene	Chr4:133830286-133831166 (-)
AKR/J	ENSMUSG00220048808	pseudogene	Chr4:132825629-132826497 (-)
BALB/cJ	ENSMUSG00180048064	pseudogene	Chr4:131465540-131466408 (-)
C3H/HeJ	ENSMUSG00175040896	pseudogene	Chr4:132493684-132494552 (-)
C57BL/6NJ	ENSMUSG00215050655	pseudogene	Chr4:134015741-134016621 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0010186	pseudogene	Chr17:44298462-44303556 (+)
CAST/EiJ	ENSTCUG00005013901	pseudogene	Chr4:133455899-133456776 (-)
CBA/J	ENSMUSG00210029538	pseudogene	Chr4:132117721-132118589 (-)
DBA/2J	ENSMUSG00185052098	pseudogene	Chr4:133631423-133632291 (-)
FVB/NJ	ENSMUSG00205049276	pseudogene	Chr4:131886364-131887232 (-)
JF1/MsJ	ENSUMUG00000045466	pseudogene	Chr4:134328395-134329275 (-)
LP/J	ENSMUSG00230040784	pseudogene	Chr4:137425377-137426257 (-)
NOD/ShiLtJ	ENSMUSG00190038895	pseudogene	Chr4:131889105-131889985 (-)
NZO/HlLtJ	ENSMUSG00225010454	pseudogene	Chr4:143379994-143380874 (-)
PWK/PhJ	ENSLUMG00010046648	pseudogene	Chr4:131313901-131314769 (-)
SPRET/EiJ	ENSMSPG00010037929	pseudogene	Chr4:133372947-133373825 (-)
WSB/EiJ	ENSIUOG00005047464	pseudogene	Chr4:131774517-131775385 (-)

Homology

• Gene Tree
  Ccnd3-ps
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  2
• Genomic Mutations
  2 involving Ccnd3-ps
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24
• RefSeq
  1

• Ensembl
  ENSMUSG00000080708 (Evidence)
• NCBI Gene
  626000

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000080708	Ensembl Gene Model | MGI Sequence Detail	881	C57BL/6J
transcript	ENSMUST00000117963	Ensembl | MGI Sequence Detail	881	Not Applicable

Molecular
Reagents

• All nucleic 9

  Genomic 6

  cDNA 3

References

• Summaries
  All 8

  Phenotypes 2
• Earliest
  J:40540 Jun DY, et al., Isolation and characterization of a processed pseudogene for murine cyclin D3. Mol Cells. 1997 Apr 30;7(2):278-83

TSS for Ccnd3-ps:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr44225	Chr4:139073306-139073331 (-)	172 bp