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Ints9 Gene Detail
Summary
  • Symbol
    Ints9
  • Name
    integrator complex subunit 9
  • Synonyms
    D14Ertd231e
  • Feature Type
    protein coding gene
  • IDs
    MGI:1098533
    NCBI Gene: 210925
  • Alliance
    gene page
  • Transcription Start Sites
    5 TSS
Location &
Maps
more
  • Sequence Map
    Chr14:65187494-65277284 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 14, 33.81 cM
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    594 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1098533
 protein coding gene Chr14:65187494-65277284 (+)
129S1/SvImJ MGP_129S1SvImJ_G0021475
 protein coding gene Chr14:59531800-59627381 (+)
A/J MGP_AJ_G0021434
 protein coding gene Chr14:58166965-58262005 (+)
AKR/J MGP_AKRJ_G0021410
 protein coding gene Chr14:60193306-60283346 (+)
BALB/cJ MGP_BALBcJ_G0021440
 protein coding gene Chr14:58113402-58206598 (+)
C3H/HeJ MGP_C3HHeJ_G0021217
 protein coding gene Chr14:59839698-59931041 (+)
C57BL/6NJ MGP_C57BL6NJ_G0021879
 protein coding gene Chr14:62311464-62403469 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0019419
 protein coding gene Chr14:56103013-56195385 (+)
CAST/EiJ MGP_CASTEiJ_G0020734
 protein coding gene Chr14:56320330-56416071 (+)
CBA/J MGP_CBAJ_G0021184
 protein coding gene Chr14:64176922-64278858 (+)
DBA/2J MGP_DBA2J_G0021307
 protein coding gene Chr14:57826292-57914539 (+)
FVB/NJ MGP_FVBNJ_G0021286
 protein coding gene Chr14:57222066-57316377 (+)
LP/J MGP_LPJ_G0021382
 protein coding gene Chr14:60571493-60664358 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0021315
 protein coding gene Chr14:63327093-63419612 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0021902
 protein coding gene Chr14:59366856-59462772 (+)
PWK/PhJ MGP_PWKPhJ_G0020478
 protein coding gene Chr14:54531981-54619392 (+)
SPRET/EiJ MGP_SPRETEiJ_G0020311
 protein coding gene Chr14:55335982-55423535 (+)
WSB/EiJ MGP_WSBEiJ_G0020787
 protein coding gene Chr14:59685718-59776153 (+)



Homology
more
  • Human Ortholog
    INTS9, integrator complex subunit 9
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    INTS9, integrator complex subunit 9
  • Synonyms
    CPSF2L, INT9, RC74
  • Links
    NCBI Gene ID: 55756
    neXtProt AC: NX_Q9NV88
    UniProt: Q9NV88

  • Chr Location
    8p21.1; chr8:28767661-28890242 (-)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    4 phenotypes from 1 allele in 1 genetic background
    12 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
immune system
integument
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
neoplasm
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
vision/eye

Click cells to view annotations.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    8
  • GO References
    2
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
DNA-templated transcription
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    71
  • Comparison Matrix
    Gene Expression + Phenotype
    • Interactions
    less
    Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic 210925 NCBI Gene Model | MGI Sequence Detail 89791 C57BL/6J ±  kb
    transcript NM_001253731 RefSeq | MGI Sequence Detail 2727 ZRU/MplStud  
    polypeptide Q8K114 UniProt | EBI | MGI Sequence Detail 658 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    Molecular
    Reagents
    less
    • All nucleic 72
      cDNA 71
      Primer pair 1

      Microarray probesets 3
    Other
    Accession IDs
    less
    MGI:2387175
    References
    more
    • Summaries
      All 37
      Gene Ontology 2
      Phenotypes 12
    • Earliest
      J:60984 Ko MS, et al., Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Development. 2000 Apr;127(8):1737-49
    • Latest
      J:265628 Gaudet P, et al., Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief Bioinform. 2011 Sep;12(5):449-62
    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
    Citing These Resources
    Funding Information
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    Send questions and comments to User Support.     		last database update
    11/28/2023
    MGI 6.22     		The Jackson Laboratory