Kif13a MGI Mouse Gene Detail - MGI:1098264

Symbol

Kif13a
Name

kinesin family member 13A
Synonyms

4930505I07Rik, N-3 kinesin

Feature Type

protein coding gene
IDs

MGI:1098264
NCBI Gene: 16553
Alliance

genome feature page
Transcription Start Sites

3 TSS

Sequence Map

Chr13:46902563-47083343 bp, - strand
From Ensembl annotation of GRCm39
View this region in JBrowse
Genome Browsers

Ensembl | UCSC | NCBI

Genetic Map

Chromosome 13, 24.49 cM, cytoband B1
Mapping Data

2 experiments

SNPs within 2kb

5448 from dbSNP Build 142
Strain Annotations

19

For selected strains:

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1098264	protein coding gene	Chr13:46902563-47083871 (-)
129S1/SvImJ	ENSMUSG00200035032	protein coding gene	Chr13:44157639-44338540 (-)
A/J	ENSMUSG00195027733	protein coding gene	Chr13:43217081-43397433 (-)
AKR/J	ENSMUSG00220008810	protein coding gene	Chr13:43022132-43202789 (-)
BALB/cJ	ENSMUSG00180007888	protein coding gene	Chr13:43519495-43699846 (-)
C3H/HeJ	ENSMUSG00175028020	protein coding gene	Chr13:43483702-43664001 (-)
C57BL/6NJ	ENSMUSG00215005254	protein coding gene	Chr13:43647100-43827746 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0018484	protein coding gene	Chr13:41990369-42172179 (-)
CAST/EiJ	ENSTCUG00005028435	protein coding gene	Chr13:43548941-43730953 (-)
CBA/J	ENSMUSG00210026528	protein coding gene	Chr13:43489193-43669495 (-)
DBA/2J	ENSMUSG00185030201	protein coding gene	Chr13:44309265-44489598 (-)
FVB/NJ	ENSMUSG00205011138	protein coding gene	Chr13:43269326-43449660 (-)
JF1/MsJ	ENSUMUG00000013311	protein coding gene	Chr13:43822255-44002676 (-)
LP/J	ENSMUSG00230027696	protein coding gene	Chr13:53621371-53801693 (-)
NOD/ShiLtJ	ENSMUSG00190011971	protein coding gene	Chr13:43707893-43888222 (-)
NZO/HlLtJ	ENSMUSG00225036044	protein coding gene	Chr13:47391525-47571565 (-)
PWK/PhJ	ENSLUMG00010019853	protein coding gene	Chr13:42672665-42853304 (-)
SPRET/EiJ	ENSMSPG00010027738	protein coding gene	Chr13:42772805-42958374 (-)
WSB/EiJ	ENSIUOG00005024982	protein coding gene	Chr13:42863247-43043294 (-)

Human Ortholog

KIF13A, kinesin family member 13A

Vertebrate Orthologs

3

Vertebrate Orthology Source

Alliance of Genome Resources

Human Ortholog

KIF13A, kinesin family member 13A
Synonyms

bA500C11.2, RBKIN
Links

HGNC:14566

NCBI Gene ID: 63971

UniProt: Q9H1H9
Chr Location

6p22.3; chr6:17759126-17987635 (-) GRCh38

MGI Vertebrate Homology

Kif13a stringent orthology
1 human;1 mouse;1 rat;1 zebrafish
HCOP

vertebrate homology predictions: KIF13A
Gene Tree

Kif13a

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Phenotype Summary

18 phenotypes from 3 alleles in 3 genetic backgrounds
3 phenotypes from multigenic genotypes
18 phenotype references

Phenotype Overview

Blue squares indicate phenotypes directly attributed to mutations/alleles of this gene.

adipose tissue	behavior/neurological	cardiovascular system	cellular	craniofacial	digestive/alimentary system	embryo	endocrine/exocrine glands	growth/size/body	hearing/vestibular/ear	hematopoietic system	homeostasis/metabolism	integument	immune system	limbs/digits/tail	liver/biliary system	mortality/aging	muscle	nervous system	pigmentation	renal/urinary system	reproductive system	respiratory system	skeleton	taste/olfaction	neoplasm	vision/eye

Click cells to view annotations.

All Mutations and Alleles

16
Chemically induced (other)

1
Endonuclease-mediated

6
Gene trapped

6
Targeted

3
Genomic Mutations

1 involving Kif13a
Incidental Mutations

Mutagenetix , APF
Find Mice (IMSR)

108 strains or lines available
Comparison Matrix

Gene Expression + Phenotype

Mice homozygous for a knock-out allele exhibit increased anxiety.

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All GO Annotations

42
GO References

8

Molecular Function

carbohydrate derivative binding	cytoskeletal protein binding	DNA binding	enzyme regulator	hydrolase	ligase	lipid binding	oxidoreductase	RNA binding	signaling receptor activity	signaling receptor binding	transcription	transferase	transporter

Biological Process

carbohydrate derivative metabolism	cell differentiation	cell population proliferation	cellular component organization	DNA-templated transcription	establishment of localization	homeostatic process	immune system process	lipid metabolic process	programmed cell death	protein metabolic process	response to stimulus	signaling	system development

Cellular Component

cell projection	cytoplasmic vesicle	cytoskeleton	cytosol	endoplasmic reticulum	endosome	extracellular region	Golgi apparatus	mitochondrion	membraneless organelle	nucleus	organelle envelope	organelle lumen	plasma membrane	protein-containing complex	synapse	vacuole

Click cells to view annotations.

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Expression Overview

GXD's primary emphasis is on endogenous gene expression during development. Click on grid cells to view annotations.

Blue cells = expressed in wild-type.
Gray triangles = other expression annotations only
(e.g. absence of expression or data from mutants).

early conceptus	embryo ectoderm	embryo endoderm	embryo mesoderm	embryo mesenchyme	extraembryonic component	alimentary system	auditory system	branchial arches	cardiovascular system	connective tissue	endocrine system	exocrine system	hemolymphoid system	integumental system	limbs	liver and biliary system	musculoskeletal system	nervous system	olfactory system	reproductive system	respiratory system	urinary system	visual system

Click cells to view annotations.

Assay Results

730
Tissues

42
cDNA Data

11
Literature Summary

5

Images

Tissue x Stage Matrix

Comparison Matrix

Gene Expression + Phenotype

Other Mouse Links

Allen Institute

GEO

Expression Atlas
Other Vertebrate Links

Xenbase kif13a

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All Sequences

103
RefSeq

40
UniProt

12
CCDS

CCDS36652.1

Ensembl

ENSMUSG00000021375 (Evidence)
NCBI Gene

16553

			Length	Strain/Species	Flank
genomic	ENSMUSG00000021375	Ensembl Gene Model \| MGI Sequence Detail	180781	C57BL/6J	± kb
transcript	ENSMUST00000056978	Ensembl \| MGI Sequence Detail	6866	Not Applicable
polypeptide	ENSMUSP00000055304	Ensembl \| MGI Sequence Detail	1749	Not Applicable

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UniProt

12 Sequences
Protein Ontology

PR:000009286 kinesin-like protein KIF13A

(term hierarchy)
PDB

5DJN, 5DJO
InterPro Domains

IPR000253 Forkhead-associated (FHA) domain

IPR032405 Kinesin-associated

IPR022164 Kinesin-like

IPR022140 Kinesin-like KIF1-type

IPR001752 Kinesin motor domain

IPR019821 Kinesin motor domain, conserved site

IPR036961 Kinesin motor domain superfamily

IPR027417 P-loop containing nucleoside triphosphate hydrolase

IPR008984 SMAD/FHA domain superfamily

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All nucleic 12

cDNA 11

Primer pair 1

Microarray probesets 7

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MGI:2444226

Summaries

All 53

Developmental Gene Expression 5

Gene Ontology 8

Phenotypes 18
Earliest

J:182573 Roderick TH, Producing and detecting paracentric chromosomal inversions in mice. Mutat Res. 1971 Jan;11(1):59-69
Latest

J:345621 Adams DJ, et al., Genetic determinants of micronucleus formation in vivo. Nature. 2024 Mar;627(8002):130-136

TSS for Kif13a:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr122358	Chr13:47083682-47083693 (-)	-345 bp
Tssr122357	Chr13:47083278-47083305 (-)	51 bp
Tssr122356	Chr13:47083200-47083276 (-)	105 bp

Contributing Projects: Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources Funding Information Warranty Disclaimer, Privacy Notice, Licensing, & Copyright Send questions and comments to User Support.	last database update 09/01/2026 MGI 6.24