Tfdp1-ps Pseudogene Detail

Summary

• Symbol
  Tfdp1-ps
• Name
  transcription factor Dp 1, pseudogene

• Feature Type
  pseudogene
• IDs
  MGI:109560
  NCBI Gene: 21782
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr1:77042507-77044329 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, 39.39 cM, cytoband C3-C5
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  29 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_109560	pseudogene	Chr1:77042507-77044329 (+)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Tfdp1-ps
• Find Mice (IMSR)
  0 strains or lines available

Sequences &
Gene Models

• All Sequences
  4
• RefSeq
  1

• NCBI Gene
  21782

Representative Sequences			Length	Strain/Species
genomic	21782	NCBI Gene Model | MGI Sequence Detail	1823	C57BL/6J

Molecular
Reagents

• All nucleic 3

  Genomic 3

Other
Accession IDs

MGD-MRK-39559

References

• Summaries
  All 7

  Phenotypes 4
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:40071 Gopalkrishnan RV, et al., A DP1 pseudogene derived from an aberrantly processed RNA. Gene. 1997 Apr 11;189(1):113-7

TSS for Tfdp1-ps:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr7562	Chr1:77042503-77042515 (+)	2 bp