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Xlr3a Gene Detail
Summary
  • Symbol
    Xlr3a
  • Name
    X-linked lymphocyte-regulated 3A
  • Feature Type
    protein coding gene
  • IDs
    MGI:109506
    NCBI Gene: 22445
  • Member of
    Xlr3 cluster
  • Alliance
    gene page
Location &
Maps
more
  • Sequence Map
    ChrX:72129899-72140701 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome X, 37.29 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    26 from dbSNP Build 142
  • Strain Annotations
    9
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_109506
 protein coding gene ChrX:72129899-72140701 (-)
129S1/SvImJ MGP_129S1SvImJ_G0035804
 protein coding gene ChrX:68985827-69005788 (-)
A/J no annotation
AKR/J MGP_AKRJ_G0035757
 protein coding gene ChrX:72582955-72593809 (+)
BALB/cJ no annotation
C3H/HeJ MGP_C3HHeJ_G0035527
 protein coding gene ChrX:71218917-71236254 (+)
C57BL/6NJ MGP_C57BL6NJ_G0036349
 protein coding gene ChrX:72991903-72997113 (+)
CAROLI/EiJ no annotation
CAST/EiJ no annotation
CBA/J no annotation
DBA/2J MGP_DBA2J_G0035603
 protein coding gene ChrX:68472905-68483890 (-)
FVB/NJ no annotation
LP/J no annotation
NOD/ShiLtJ no annotation
NZO/HlLtJ MGP_NZOHlLtJ_G0036371
 protein coding gene ChrX:70325472-70340132 (+)
PWK/PhJ MGP_PWKPhJ_G0034466
 protein coding gene ChrX:52737921-52741174 (+)
SPRET/EiJ MGP_SPRETEiJ_G0034350
 protein coding gene ChrX:57390637-57391649 (+)
WSB/EiJ no annotation



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    3 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    3
  • GO References
    1
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    867
  • Tissues
    37
  • cDNA Data
    16
  • Literature Summary
    5
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 22445 NCBI Gene Model | MGI Sequence Detail 10803 C57BL/6J ±  kb
transcript NM_001110784 RefSeq | MGI Sequence Detail 1694 ZRU/MplStud  
polypeptide Q60595 UniProt | EBI | MGI Sequence Detail 226 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 18
    cDNA 17
    Primer pair 1

    Microarray probesets 1
Other
Accession IDs
less
MGD-MRK-39505
References
more
  • Summaries
    All 25
    Developmental Gene Expression 5
    Gene Ontology 1
    Phenotypes 3
  • Earliest
    J:22393 Bergsagel PL, et al., Sequence and expression of murine cDNAs encoding Xlr3a and Xlr3b, defining a new X-linked lymphocyte-regulated Xlr gene subfamily. Gene. 1994 Dec 15;150(2):345-50
  • Latest
    J:313619 Bedogni F, et al., Cell-Type-Specific Gene Expression in Developing Mouse Neocortex: Intermediate Progenitors Implicated in Axon Development. Front Mol Neurosci. 2021;14:686034
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
04/09/2024
MGI 6.23 		The Jackson Laboratory