Snrp1c-ps1 Pseudogene Detail

Summary

• Symbol
  Snrp1c-ps1
• Name
  U1 small nuclear ribonucleoprotein 1C, pseudogene 1
• Synonyms
  mC-[y]15

• Feature Type
  pseudogene
• IDs
  MGI:109488
  NCBI Gene: 20631
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr7:126323108-126323478 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, 69.25 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  102 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_109488	pseudogene	Chr7:126323108-126323581 (+)
129S1/SvImJ	ENSMUSG00200027790	pseudogene	Chr7:112828067-112828540 (+)
A/J	ENSMUSG00195046175	pseudogene	Chr7:117350209-117350682 (+)
AKR/J	ENSMUSG00220028065	pseudogene	Chr7:110777527-110778000 (+)
BALB/cJ	ENSMUSG00180013933	pseudogene	Chr7:114018182-114018655 (+)
C3H/HeJ	ENSMUSG00175019979	pseudogene	Chr7:114751147-114751620 (+)
C57BL/6NJ	ENSMUSG00215038934	pseudogene	Chr7:114031103-114031576 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0012272	pseudogene	Chr7:128742024-128742497 (+)
CAST/EiJ	ENSTCUG00005049600	pseudogene	Chr7:117245596-117246069 (+)
CBA/J	ENSMUSG00210023479	pseudogene	Chr7:114512239-114512712 (+)
DBA/2J	ENSMUSG00185051272	pseudogene	Chr7:118825086-118825559 (+)
FVB/NJ	ENSMUSG00205041426	pseudogene	Chr7:114464244-114464717 (+)
JF1/MsJ	ENSUMUG00000048222	pseudogene	Chr7:123878773-123879246 (+)
LP/J	ENSMUSG00230053388	pseudogene	Chr7:124928056-124928529 (+)
NOD/ShiLtJ	ENSMUSG00190020852	pseudogene	Chr7:114671234-114671707 (+)
NZO/HlLtJ	ENSMUSG00225012767	pseudogene	Chr7:123164144-123164617 (+)
PWK/PhJ	ENSLUMG00010042455	pseudogene	Chr7:113018547-113019020 (+)
SPRET/EiJ	ENSMSPG00010013349	pseudogene	Chr7:114288827-114289300 (+)
WSB/EiJ	ENSIUOG00005032441	pseudogene	Chr7:115373453-115373926 (+)

Homology

• Gene Tree
  Snrp1c-ps1
  

Human Diseases

• References
  2 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  48 phenotype references
  

• All Mutations and Alleles
  4
• Targeted
  4
• Genomic Mutations
  4 involving Snrp1c-ps1
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24
• RefSeq
  1

• Ensembl
  ENSMUSG00000108357 (Evidence)
• NCBI Gene
  20631

Representative Sequences			Length	Strain/Species
genomic	20631	NCBI Gene Model | MGI Sequence Detail	371	C57BL/6J

Molecular
Reagents

• All nucleic 2

  Genomic 2

Other
Accession IDs

MGD-MRK-39487

References

• Summaries
  All 55

  Diseases 2

  Phenotypes 48
• Earliest
  J:37896 Nelissen RL, et al., Cloning and characterization of two processed pseudogenes and the cDNA for the murine U1 snRNP-specific protein C. Gene. 1997 Jan 15;184(2):273-8
• Latest
  J:389705 Hao L, et al., Heart rate and sleep history encode ultradian REM sleep timing. Curr Biol. 2026 Mar 23;36(6):1422-1434.e5