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Frat1 Gene Detail
Summary
  • Symbol
    Frat1
  • Name
    frequently rearranged in advanced T cell lymphomas
  • Feature Type
    protein coding gene
  • IDs
    MGI:109450
    NCBI Gene: 14296
  • Alliance
    genome feature page
  • Transcription Start Sites
    3 TSS
Location &
Maps
more
  • Sequence Map
    Chr19:41818409-41821022 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 19, 35.30 cM
  • Mapping Data
    6 experiments
Strain
Comparison
more
  • SNPs within 2kb
    124 from dbSNP Build 142
  • Strain Annotations
    18
  • PCR
    1
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_109450
 protein coding gene Chr19:41818409-41821022 (+)
129S1/SvImJ ENSMUSG00200030493
 protein coding gene Chr19:38550560-38553177 (+)
A/J ENSMUSG00195011102
 protein coding gene Chr19:38654603-38657248 (+)
AKR/J ENSMUSG00220017592
 protein coding gene Chr19:38467343-38469958 (+)
BALB/cJ ENSMUSG00180027072
 protein coding gene Chr19:38907043-38909688 (+)
C3H/HeJ ENSMUSG00175037557
 protein coding gene Chr19:38429563-38432178 (+)
C57BL/6NJ ENSMUSG00215022149
 protein coding gene Chr19:38507898-38510512 (+)
CAROLI/EiJ no annotation
CAST/EiJ ENSTCUG00005015471
 protein coding gene Chr19:38113361-38116004 (+)
CBA/J ENSMUSG00210030518
 protein coding gene Chr19:38511686-38514301 (+)
DBA/2J ENSMUSG00185032062
 protein coding gene Chr19:39031862-39034477 (+)
FVB/NJ ENSMUSG00205006167
 protein coding gene Chr19:37982433-37985049 (+)
JF1/MsJ ENSUMUG00000045755
 protein coding gene Chr19:39196301-39198919 (+)
LP/J ENSMUSG00230030992
 protein coding gene Chr19:39820660-39823276 (+)
NOD/ShiLtJ ENSMUSG00190010917
 protein coding gene Chr19:38381671-38384287 (+)
NZO/HlLtJ ENSMUSG00225043407
 protein coding gene Chr19:43378728-43381341 (+)
PWK/PhJ ENSLUMG00010000974
 protein coding gene Chr19:38364635-38367254 (+)
SPRET/EiJ ENSMSPG00010020208
 protein coding gene Chr19:38097271-38099879 (+)
WSB/EiJ ENSIUOG00005035961
 protein coding gene Chr19:37888253-37890896 (+)



Homology
more
  • Human Ortholog
    FRAT1, FRAT regulator of Wnt signaling pathway 1
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    FRAT1, FRAT regulator of Wnt signaling pathway 1
  • Links
    NCBI Gene ID: 10023
    UniProt: Q92837

  • Chr Location
    10q24.1; chr10:97319271-97321915 (+)  GRCh38
Human Diseases
less
  • Mutations/Alleles
    1 with disease annotations
  • References
    1 with disease annotations
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    1 phenotype from 1 allele in 1 genetic background
    1 phenotype from multigenic genotypes
    7 phenotype references
Homozygous mice are healthy and fertile with no obvious abnormalities.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    17
  • GO References
    6
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    718
  • Tissues
    96
  • cDNA Data
    18
  • Literature Summary
    7
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 14296 NCBI Gene Model | MGI Sequence Detail 2614 C57BL/6J ±  kb
transcript NM_008043 RefSeq | MGI Sequence Detail 2614 ZRU/MplStud  
polypeptide P70339 UniProt | EBI | MGI Sequence Detail 274 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    2 Sequences
  • InterPro Domains
    IPR008014 Glycogen synthase kinase-3 binding protein
Molecular
Reagents
less
  • All nucleic 27
    Genomic 2
    cDNA 18
    Primer pair 6
    Other 1

    Microarray probesets 3
Other
Accession IDs
less
MGD-MRK-38495, MGI:2147699
References
more
  • Summaries
    All 40
    Developmental Gene Expression 7
    Diseases 1
    Gene Ontology 6
    Phenotypes 7
  • Earliest
    J:38606 Jonkers J, et al., Activation of a novel proto-oncogene, Frat1, contributes to progression of mouse T-cell lymphomas. EMBO J. 1997 Feb 3;16(3):441-50
  • Latest
    J:215487 Thompson CL, et al., A high-resolution spatiotemporal atlas of gene expression of the developing mouse brain. Neuron. 2014 Jul 16;83(2):309-23
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
09/01/2026
MGI 6.24 		The Jackson Laboratory