Or7a40 Gene Detail

Summary

• Symbol
  Or7a40
• Name
  olfactory receptor family 7 subfamily A member 40
• Synonyms
  GA_x54KRFPKG5P-13123979-13123050, M12, MOR140-1, MTPCR15, Olfr19

• Feature Type
  protein coding gene
• IDs
  MGI:109316
  NCBI Gene: 18316
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr16:16490914-16491843 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 16, 10.34 cM, cytoband B1
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  7 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_109316	protein coding gene	Chr16:16490092-16494269 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0022559	protein coding gene	Chr16:13771431-13774960 (-)
A/J	MGP_AJ_G0022520	protein coding gene	Chr16:13081158-13084687 (-)
AKR/J	MGP_AKRJ_G0022497	protein coding gene	Chr16:13623186-13626715 (-)
BALB/cJ	MGP_BALBcJ_G0022525	protein coding gene	Chr16:13237490-13241019 (-)
C3H/HeJ	MGP_C3HHeJ_G0022292	protein coding gene	Chr16:13707358-13710887 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0022974	protein coding gene	Chr16:13959742-13963271 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0020494	protein coding gene	Chr16:13143933-13147466 (-)
CAST/EiJ	MGP_CASTEiJ_G0021819	protein coding gene	Chr16:13630601-13634117 (-)
CBA/J	MGP_CBAJ_G0022261	protein coding gene	Chr16:14608526-14612055 (-)
DBA/2J	MGP_DBA2J_G0022393	protein coding gene	Chr16:13025836-13029365 (-)
FVB/NJ	MGP_FVBNJ_G0022368	protein coding gene	Chr16:13051636-13055165 (-)
LP/J	MGP_LPJ_G0022460	protein coding gene	Chr16:13564518-13568047 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0022390	protein coding gene	Chr16:14316782-14320311 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0022987	protein coding gene	Chr16:13523993-13527522 (-)
PWK/PhJ	MGP_PWKPhJ_G0021561	protein coding gene	Chr16:13248262-13252517 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0021389	protein coding gene	Chr16:13535387-13538904 (-)
WSB/EiJ	MGP_WSBEiJ_G0021867	protein coding gene	Chr16:13541408-13544937 (-)

Homology

• Human Ortholog
  OR7A10, olfactory receptor family 7 subfamily A member 10

• Vertebrate Orthologs
  5

Vertebrate Orthology Source

Alliance of Genome Resources

• Human Ortholog
  OR7A10, olfactory receptor family 7 subfamily A member 10
  
• Synonyms
  BC85395_3, OR19-18
• Links
  HGNC:8356

  NCBI Gene ID: 390892

  neXtProt AC: NX_O76100

  UniProt: O76100

  
  
• Chr Location
  19p13.12; chr19:14840466-14848922 (-)  GRCh38

---

• Human Ortholog
  OR7A17, olfactory receptor family 7 subfamily A member 17
  
• Synonyms
  BC85395_4, HTPCRX19
• Links
  HGNC:8363

  NCBI Gene ID: 26333

  neXtProt AC: NX_O14581

  UniProt: O14581

  
  
• Chr Location
  19p13.12; chr19:14878203-14886132 (-)  GRCh38

---

• Human Ortholog
  OR7A2P, olfactory receptor family 7 subfamily A member 2 pseudogene
  
• Synonyms
  hg1003, OLF4p, OR19-18, OR7A2, OR7A7
• Links
  HGNC:8370

  NCBI Gene ID: 390894

  UniProt: Q8NGA2

  
  
• Chr Location
  19p13.12; chr19:14863586-14865262 (-)  GRCh38

---

• Human Ortholog
  OR7A5, olfactory receptor family 7 subfamily A member 5
  
• Synonyms
  HTPCR2
• Links
  HGNC:8368

  NCBI Gene ID: 26659

  neXtProt AC: NX_Q15622

  UniProt: Q15622

  
  
• Chr Location
  19p13.12; chr19:14826241-14835185 (-)  GRCh38

---

• MGI Vertebrate Homology
  Or7a40 stringent orthology
  4 human;1 mouse;1 rat
  
• HCOP
  vertebrate homology predictions: OR7A10, OR7A17, OR7A2P, OR7A5
• Gene Tree
  Or7a40
  

Mutations,
Alleles, and
Phenotypes

• Incidental Mutations
  APF
• Find Mice (IMSR)
  15 strains or lines available

Gene Ontology
(GO)
Classifications

• All GO Annotations
  9
• GO References
  4

Expression

• Assay Results
  732
• Tissues
  15
• cDNA Data
  4
• Literature Summary
  2

Images

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  33
• RefSeq
  2
• UniProt
  3
• CCDS
  CCDS27987.1

• Ensembl
  ENSMUSG00000048101 (Evidence)
• NCBI Gene
  18316

Representative Sequences			Length	Strain/Species
genomic	18316	NCBI Gene Model | MGI Sequence Detail	930	C57BL/6J
transcript	NM_146335	RefSeq | MGI Sequence Detail	930	Not Specified
polypeptide	Q9JHB2	UniProt | EBI | MGI Sequence Detail	309	Not Applicable

Protein
Information

• UniProt
  3 Sequences
• Protein Ontology
  PR:000012142 olfactory receptor 7A40
  (term hierarchy)
• InterPro Domains
  IPR017452 GPCR, rhodopsin-like, 7TM
  IPR000276 G protein-coupled receptor, rhodopsin-like
  IPR000725 Olfactory receptor

Molecular
Reagents

• All nucleic 6

  cDNA 4

  Primer pair 1

  Other 1

  
  

  Microarray probesets 1

Other
Accession IDs

MGD-MRK-38361

References

• Summaries
  All 24

  Developmental Gene Expression 2

  Gene Ontology 4
• Earliest
  J:36595 Mombaerts P, et al., Visualizing an olfactory sensory map. Cell. 1996 Nov 15;87(4):675-86
• Latest
  J:289678 Olender T, et al., A unified nomenclature for vertebrate olfactory receptors. BMC Evol Biol. 2020 Apr 15;20(1):42