Psmb6-ps2 Pseudogene Detail

Summary

• Symbol
  Psmb6-ps2
• Name
  proteasome (prosome, macropain) subunit, beta type 6, pseudogene 2
• Synonyms
  EG383650, Lmp19-ps1, Psmb6-rs1

• Feature Type
  pseudogene
• IDs
  MGI:109264
  NCBI Gene: 383650
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr1:101313611-101314315 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, 49.26 cM
• Mapping Data
  5 experiments

Strain
Comparison

• SNPs within 2kb
  233 from dbSNP Build 142
• Strain Annotations
  18
• RFLP
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_109264	pseudogene	Chr1:101313575-101314388 (+)
129S1/SvImJ	ENSMUSG00200000302	pseudogene	Chr1:98517878-98518595 (+)
A/J	ENSMUSG00195000376	pseudogene	Chr1:98020480-98021184 (+)
AKR/J	ENSMUSG00220000216	pseudogene	Chr1:98237989-98238706 (+)
BALB/cJ	ENSMUSG00180005910	pseudogene	Chr1:98328094-98328798 (+)
C3H/HeJ	ENSMUSG00175005665	pseudogene	Chr1:98234122-98234826 (+)
C57BL/6NJ	ENSMUSG00215000385	pseudogene	Chr1:98246539-98247243 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0009214	pseudogene	Chr1:93978589-93979304 (+)
CAST/EiJ	ENSTCUG00005000113	pseudogene	Chr1:97678755-97679470 (+)
CBA/J	ENSMUSG00210000127	pseudogene	Chr1:98092278-98092982 (+)
DBA/2J	ENSMUSG00185008444	pseudogene	Chr1:102564060-102564777 (+)
FVB/NJ	ENSMUSG00205000988	pseudogene	Chr1:97427856-97428560 (+)
JF1/MsJ	ENSUMUG00000000223	pseudogene	Chr1:101223698-101224413 (+)
LP/J	no annotation
NOD/ShiLtJ	ENSMUSG00190000745	pseudogene	Chr1:98165813-98166530 (+)
NZO/HlLtJ	ENSMUSG00225000458	pseudogene	Chr1:105718823-105719527 (+)
PWK/PhJ	ENSLUMG00010006585	pseudogene	Chr1:97626062-97626767 (+)
SPRET/EiJ	ENSMSPG00010000908	pseudogene	Chr1:99877025-99877728 (+)
WSB/EiJ	ENSIUOG00005000278	pseudogene	Chr1:97803366-97804070 (+)

Homology

• Gene Tree
  Psmb6-ps2
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  2
• Radiation induced
  1
• Genomic Mutations
  3 involving Psmb6-ps2
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000100222 (Evidence)
• NCBI Gene
  383650

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000100222	Ensembl Gene Model | MGI Sequence Detail	705	C57BL/6J
transcript	ENSMUST00000187074	Ensembl | MGI Sequence Detail	705	Not Applicable

Molecular
Reagents

• All nucleic 1

  cDNA 1

Other
Accession IDs

MGD-MRK-24111, MGD-MRK-38309, MGI:3643878

References

• Summaries
  All 13

  Phenotypes 4
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:93219 Everett CA, et al., Genetic influences on ovulation of primary oocytes in LT/Sv strain mice. Reproduction. 2004 11;128(5):565-571