Tpt1-ps1 Pseudogene Detail

Summary

• Symbol
  Tpt1-ps1
• Name
  tumor protein, translationally-controlled, pseudogene 1
• Synonyms
  Gm12487, Tpt1-rs

• Feature Type
  pseudogene
• IDs
  MGI:107797
  NCBI Gene: 668583
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr3:101140776-101141211 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, 44.06 cM
• Mapping Data
  3 experiments

Strain
Comparison

• SNPs within 2kb
  44 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_107797	pseudogene	Chr3:101140776-101141439 (+)
129S1/SvImJ	ENSMUSG00200045574	pseudogene	Chr3:97746224-97746659 (+)
A/J	ENSMUSG00195049060	pseudogene	Chr3:98152642-98153077 (+)
AKR/J	ENSMUSG00220044163	pseudogene	Chr3:96511230-96511665 (+)
BALB/cJ	ENSMUSG00180044043	pseudogene	Chr3:98092250-98092685 (+)
C3H/HeJ	ENSMUSG00175032138	pseudogene	Chr3:97638445-97638880 (+)
C57BL/6NJ	ENSMUSG00215039962	pseudogene	Chr3:98403672-98404107 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0010988	pseudogene	Chr3:95355189-95355623 (+)
CAST/EiJ	ENSTCUG00005021679	pseudogene	Chr3:98361623-98362058 (+)
CBA/J	ENSMUSG00210051409	pseudogene	Chr3:98260636-98261071 (+)
DBA/2J	ENSMUSG00185045841	pseudogene	Chr3:98746783-98747218 (+)
FVB/NJ	ENSMUSG00205028013	pseudogene	Chr3:97323163-97323598 (+)
JF1/MsJ	ENSUMUG00000052232	pseudogene	Chr3:97455668-97456103 (+)
LP/J	ENSMUSG00230046842	pseudogene	Chr3:100674801-100675236 (+)
NOD/ShiLtJ	ENSMUSG00190048272	pseudogene	Chr3:98934289-98934724 (+)
NZO/HlLtJ	ENSMUSG00225021333	pseudogene	Chr3:103125775-103126210 (+)
PWK/PhJ	ENSLUMG00010033112	pseudogene	Chr3:97544799-97545234 (+)
SPRET/EiJ	ENSMSPG00010047289	pseudogene	Chr3:97794214-97794649 (+)
WSB/EiJ	ENSIUOG00005031229	pseudogene	Chr3:98278378-98278813 (+)

Homology

• Gene Tree
  Tpt1-ps1
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Tpt1-ps1
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  1

• Ensembl
  ENSMUSG00000083546 (Evidence)
• NCBI Gene
  668583

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000083546	Ensembl Gene Model | MGI Sequence Detail	436	C57BL/6J
transcript	ENSMUST00000120257	Ensembl | MGI Sequence Detail	436	Not Applicable

Molecular
Reagents

• All nucleic 1

  Primer pair 1

Other
Accession IDs

MGD-MRK-36374, MGI:3650950

References

• Summaries
  All 15

  Diseases 1

  Phenotypes 4
• Earliest
  J:44483 Brady KP, et al., Genetic mapping of 262 loci derived from expressed sequences in a murine interspecific cross using single-strand conformational polymorphism analysis. Genome Res. 1997 Nov;7(11):1085-93
• Latest
  J:302829 Lu J, et al., Mouse models for human hyperuricaemia: a critical review. Nat Rev Rheumatol. 2019 Jul;15(7):413-426