Fkbp1a-ps2 Pseudogene Detail

Summary

• Symbol
  Fkbp1a-ps2
• Name
  FK506 binding protein 1a, pseudogene 2
• Synonyms
  Fkbp1-rs2, Fkbp-rs2

• Feature Type
  pseudogene
• IDs
  MGI:107772
  NCBI Gene: 14223
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr10:21286162-21286472 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, 9.76 cM
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  120 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_107772	pseudogene	Chr10:21285051-21286589 (-)
129S1/SvImJ	ENSMUSG00200011286	pseudogene	Chr10:18275521-18275831 (-)
A/J	ENSMUSG00195006794	pseudogene	Chr10:18287655-18287965 (-)
AKR/J	ENSMUSG00220010320	pseudogene	Chr10:18199055-18199365 (-)
BALB/cJ	ENSMUSG00180015145	pseudogene	Chr10:18411895-18412205 (-)
C3H/HeJ	ENSMUSG00175021044	pseudogene	Chr10:18434299-18434609 (-)
C57BL/6NJ	ENSMUSG00215003817	pseudogene	Chr10:18241420-18241730 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005030873	pseudogene	Chr10:18201589-18201989 (-)
CBA/J	ENSMUSG00210015696	pseudogene	Chr10:18371401-18371711 (-)
DBA/2J	ENSMUSG00185007474	pseudogene	Chr10:18356396-18356706 (-)
FVB/NJ	ENSMUSG00205017982	pseudogene	Chr10:18268802-18269112 (-)
JF1/MsJ	ENSUMUG00000013352	pseudogene	Chr10:18413534-18413845 (-)
LP/J	ENSMUSG00230018542	pseudogene	Chr10:20009540-20009850 (-)
NOD/ShiLtJ	ENSMUSG00190010976	pseudogene	Chr10:18346761-18347071 (-)
NZO/HlLtJ	ENSMUSG00225030380	pseudogene	Chr10:24497126-24497436 (-)
PWK/PhJ	ENSLUMG00010015344	pseudogene	Chr10:18180428-18180828 (-)
SPRET/EiJ	ENSMSPG00010011643	pseudogene	Chr10:18815024-18815335 (-)
WSB/EiJ	ENSIUOG00005024080	pseudogene	Chr10:17978047-17978357 (-)

Homology

• Gene Tree
  Fkbp1a-ps2
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Fkbp1a-ps2
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000112405 (Evidence)
• NCBI Gene
  14223

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000112405	Ensembl Gene Model | MGI Sequence Detail	311	C57BL/6J
transcript	ENSMUST00000219474	Ensembl | MGI Sequence Detail	311	Not Applicable

Molecular
Reagents

• All nucleic 1

  Primer pair 1

Other
Accession IDs

MGD-MRK-36349

References

• Summaries
  All 12

  Phenotypes 5
• Earliest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
• Latest
  J:74548 Benson KF, et al., Molecular Characterization of the Mouse In(10)17Rk Inversion and Identification of a Novel Muscle-Specific Gene at the Proximal Breakpoint. Genetics. 2002 Jan;160(1):279-87

TSS for Fkbp1a-ps2:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr97006	Chr10:21286478-21286486 (-)	-10 bp