Atp5k-ps4 Pseudogene Detail

Summary

• Symbol
  Atp5k-ps4
• Name
  ATP synthase, H+ transporting, mitochondrial F1F0 complex, subunit E, pseudogene 4
• Synonyms
  Atp5k-rs1, Gm13526

• Feature Type
  pseudogene
• IDs
  MGI:107702
  NCBI Gene: 108292
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr2:57104066-57104254 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, 31.66 cM

Strain
Comparison

• SNPs within 2kb
  85 from dbSNP Build 142
• Strain Annotations
  17
• RFLP
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_107702	pseudogene	Chr2:57104058-57104259 (-)
129S1/SvImJ	ENSMUSG00200003066	pseudogene	Chr2:54164347-54164526 (-)
A/J	ENSMUSG00195005265	pseudogene	Chr2:54284724-54284903 (-)
AKR/J	ENSMUSG00220007391	pseudogene	Chr2:54386705-54386884 (-)
BALB/cJ	ENSMUSG00180021018	pseudogene	Chr2:54243681-54243869 (-)
C3H/HeJ	ENSMUSG00175014237	pseudogene	Chr2:54309803-54309982 (-)
C57BL/6NJ	ENSMUSG00215009193	pseudogene	Chr2:54292300-54292488 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005023316	pseudogene	Chr2:53642539-53642722 (-)
CBA/J	ENSMUSG00210034789	pseudogene	Chr2:54329318-54329497 (-)
DBA/2J	ENSMUSG00185008691	pseudogene	Chr2:54185222-54185401 (-)
FVB/NJ	ENSMUSG00205021127	pseudogene	Chr2:53829297-53829476 (-)
JF1/MsJ	ENSUMUG00000023262	pseudogene	Chr2:53879603-53879716 (-)
LP/J	ENSMUSG00230001700	pseudogene	Chr2:56050687-56050875 (-)
NOD/ShiLtJ	ENSMUSG00190044435	pseudogene	Chr2:54266665-54266844 (-)
NZO/HlLtJ	no annotation
PWK/PhJ	ENSLUMG00010005507	pseudogene	Chr2:54036929-54037042 (-)
SPRET/EiJ	ENSMSPG00010011980	pseudogene	Chr2:55117103-55117216 (-)
WSB/EiJ	ENSIUOG00005028365	pseudogene	Chr2:54264224-54264403 (-)

Homology

• Gene Tree
  Atp5k-ps4
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Atp5k-ps4
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21
• RefSeq
  1

• Ensembl
  ENSMUSG00000080812 (Evidence)
• NCBI Gene
  108292

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000080812	Ensembl Gene Model | MGI Sequence Detail	189	C57BL/6J
transcript	ENSMUST00000117970	Ensembl | MGI Sequence Detail	189	Not Applicable

Molecular
Reagents

• All nucleic 1

  Genomic 1

Other
Accession IDs

MGD-MRK-36278, MGI:3651219

References

• Summaries
  All 9

  Phenotypes 2
• Earliest
  J:34884 Swartz DA, et al., The e subunit gene of murine F1F0-ATP synthase. Genomic sequence, chromosomal mapping, and diet regulation. J Biol Chem. 1996 Aug 23;271(34):20942-8