Rny3 MGI Mouse Gene Detail - MGI:107304 - RNA, Y3 small cytoplasmic (associated with Ro protein)

Symbol

Rny3
Name

RNA, Y3 small cytoplasmic (associated with Ro protein)

Feature Type

scRNA gene
IDs

MGI:107304
NCBI Gene: 19874
Alliance

genome feature page
Transcription Start Sites

1 TSS

Sequence Map

Chr6:47758558-47758658 bp, + strand
From NCBI annotation of GRCm39
View this region in JBrowse
Genome Browsers

Ensembl | UCSC | NCBI

Genetic Map

Chromosome 6, 22.94 cM
Mapping Data

2 experiments

SNPs within 2kb

75 from dbSNP Build 142
Strain Annotations

19
RFLP

1

For selected strains:

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_107304	scRNA gene	Chr6:47758558-47758659 (+)
129S1/SvImJ	ENSMUSG00200005285	unclassified non-coding RNA gene	Chr6:44662314-44662415 (+)
A/J	ENSMUSG00195006822	unclassified non-coding RNA gene	Chr6:44469936-44470037 (+)
AKR/J	ENSMUSG00220004676	unclassified non-coding RNA gene	Chr6:44172105-44172206 (+)
BALB/cJ	ENSMUSG00180023477	unclassified non-coding RNA gene	Chr6:44775596-44775697 (+)
C3H/HeJ	ENSMUSG00175017287	unclassified non-coding RNA gene	Chr6:44544355-44544456 (+)
C57BL/6NJ	ENSMUSG00215012170	unclassified non-coding RNA gene	Chr6:44707356-44707457 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0008802	unclassified non-coding RNA gene	Chr6:42241726-42241827 (+)
CAST/EiJ	ENSTCUG00005005078	unclassified non-coding RNA gene	Chr6:44072050-44072151 (+)
CBA/J	ENSMUSG00210018716	unclassified non-coding RNA gene	Chr6:44589220-44589321 (+)
DBA/2J	ENSMUSG00185014027	unclassified non-coding RNA gene	Chr6:45170691-45170792 (+)
FVB/NJ	ENSMUSG00205031277	unclassified non-coding RNA gene	Chr6:44829935-44830036 (+)
JF1/MsJ	ENSUMUG00000013038	unclassified non-coding RNA gene	Chr6:44553787-44553888 (+)
LP/J	ENSMUSG00230021130	unclassified non-coding RNA gene	Chr6:46159525-46159626 (+)
NOD/ShiLtJ	ENSMUSG00190039596	unclassified non-coding RNA gene	Chr6:44509251-44509352 (+)
NZO/HlLtJ	ENSMUSG00225018979	unclassified non-coding RNA gene	Chr6:48196002-48196103 (+)
PWK/PhJ	ENSLUMG00010022963	unclassified non-coding RNA gene	Chr6:44173797-44173898 (+)
SPRET/EiJ	ENSMSPG00010010544	unclassified non-coding RNA gene	Chr6:44811729-44811830 (+)
WSB/EiJ	ENSIUOG00005027879	unclassified non-coding RNA gene	Chr6:44793361-44793462 (+)

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Gene Tree

Rny3

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Phenotype Summary

1 phenotype reference

All Mutations and Alleles

1
Endonuclease-mediated

1
Find Mice (IMSR)

1 strains or lines available

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All GO Annotations

3
GO References

2

Molecular Function

carbohydrate derivative binding	cytoskeletal protein binding	DNA binding	enzyme regulator	hydrolase	ligase	lipid binding	oxidoreductase	RNA binding	signaling receptor activity	signaling receptor binding	transcription	transferase	transporter

Biological Process

carbohydrate derivative metabolism	cell differentiation	cell population proliferation	cellular component organization	DNA-templated transcription	establishment of localization	homeostatic process	immune system process	lipid metabolic process	programmed cell death	protein metabolic process	response to stimulus	signaling	system development

Cellular Component

cell projection	cytoplasmic vesicle	cytoskeleton	cytosol	endoplasmic reticulum	endosome	extracellular region	Golgi apparatus	mitochondrion	membraneless organelle	nucleus	organelle envelope	organelle lumen	plasma membrane	protein-containing complex	synapse	vacuole

Click cells to view annotations.

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Expression Overview

GXD's primary emphasis is on endogenous gene expression during development. Click on grid cells to view annotations.

Blue cells = expressed in wild-type.
Gray triangles = other expression annotations only
(e.g. absence of expression or data from mutants).

early conceptus	embryo ectoderm	embryo endoderm	embryo mesoderm	embryo mesenchyme	extraembryonic component	alimentary system	auditory system	branchial arches	cardiovascular system	connective tissue	endocrine system	exocrine system	hemolymphoid system	integumental system	limbs	liver and biliary system	musculoskeletal system	nervous system	olfactory system	reproductive system	respiratory system	urinary system	visual system

Click cells to view annotations.

Assay Results

597
cDNA Data

1

Tissue x Stage Matrix

Other Mouse Links

GEO

Expression Atlas

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All Sequences

25
RefSeq

1

Ensembl

ENSMUSG00000064945 (Evidence)
NCBI Gene

19874

Representative Sequences				Length	Strain/Species	Flank
	genomic	19874	NCBI Gene Model \| MGI Sequence Detail	101	C57BL/6J	± kb
	transcript	NR_024202	RefSeq \| MGI Sequence Detail	101	Not Specified

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All nucleic 3

Genomic 2

cDNA 1

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MGD-MRK-35770

Summaries

All 11

Gene Ontology 2

Phenotypes 1
Earliest

J:35627 Farris AD, et al., Genes for murine Y1 and Y3 Ro RNAs have class 3 RNA polymerase III promoter structures and are unlinked on mouse chromosome 6. Gene. 1996 Sep 26;174(1):35-42
Latest

J:205377 Reed JH, et al., Ro60 requires Y3 RNA for cell surface exposure and inflammation associated with cardiac manifestations of neonatal lupus. J Immunol. 2013 Jul 1;191(1):110-6

TSS for Rny3:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr56098	Chr6:47758573-47758612 (+)	35 bp

Contributing Projects: Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources Funding Information Warranty Disclaimer, Privacy Notice, Licensing, & Copyright Send questions and comments to User Support.	last database update 09/08/2026 MGI 6.24