Ly6e-ps1 Pseudogene Detail

Summary

• Symbol
  Ly6e-ps1
• Name
  lymphocyte antigen 6 family member E, pseudogene 1
• Synonyms
  Ly67-rs1, Ly6e-rs1, Tsa1-rs1

• Feature Type
  pseudogene
• IDs
  MGI:107156
  NCBI Gene: 100041323
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr12:72667549-72667915 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, 30.22 cM
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  106 from dbSNP Build 142
• Strain Annotations
  18
• RFLP
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_107156	pseudogene	Chr12:72667511-72668521 (+)
129S1/SvImJ	ENSMUSG00200032465	pseudogene	Chr12:64570135-64570501 (+)
A/J	ENSMUSG00195015311	pseudogene	Chr12:67279519-67279885 (+)
AKR/J	ENSMUSG00220015331	pseudogene	Chr12:65087552-65087918 (+)
BALB/cJ	ENSMUSG00180035419	pseudogene	Chr12:66278548-66278914 (+)
C3H/HeJ	ENSMUSG00175028880	pseudogene	Chr12:69405369-69405735 (+)
C57BL/6NJ	ENSMUSG00215033789	pseudogene	Chr12:65658818-65659184 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005036009	pseudogene	Chr12:65580379-65580745 (+)
CBA/J	ENSMUSG00210030721	pseudogene	Chr12:65842647-65843013 (+)
DBA/2J	ENSMUSG00185005044	pseudogene	Chr12:67748357-67748723 (+)
FVB/NJ	ENSMUSG00205032711	pseudogene	Chr12:65471885-65472251 (+)
JF1/MsJ	ENSUMUG00000026584	pseudogene	Chr12:71685935-71686301 (+)
LP/J	ENSMUSG00230022639	pseudogene	Chr12:74706147-74706513 (+)
NOD/ShiLtJ	ENSMUSG00190013335	pseudogene	Chr12:64903192-64903558 (+)
NZO/HlLtJ	ENSMUSG00225038295	pseudogene	Chr12:76757595-76757961 (+)
PWK/PhJ	ENSLUMG00010032758	pseudogene	Chr12:65755784-65756150 (+)
SPRET/EiJ	ENSMSPG00010028807	pseudogene	Chr12:67468639-67469005 (+)
WSB/EiJ	ENSIUOG00005012550	pseudogene	Chr12:65528882-65529248 (+)

Homology

• Gene Tree
  Ly6e-ps1
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Ly6e-ps1
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000113143 (Evidence)
• NCBI Gene
  100041323

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000113143	Ensembl Gene Model | MGI Sequence Detail	367	C57BL/6J
transcript	ENSMUST00000222501	Ensembl | MGI Sequence Detail	367	Not Applicable

Molecular
Reagents

• All nucleic 1

  cDNA 1

Other
Accession IDs

MGD-MRK-15265, MGD-MRK-35617, MGI:3781449

References

• Summaries
  All 8

  Phenotypes 2
• Earliest
  J:16061 MacNeil I, et al., Isolation of a cDNA encoding thymic shared antigen-1. A new member of the Ly6 family with a possible role in T cell development. J Immunol. 1993 Dec 15;151(12):6913-23
• Latest
  J:34487 Classon BJ, et al., Genomic organization and expression of mouse thymic shared antigen-1 (TSA-1): evidence for a processed pseudogene. Immunogenetics. 1996;44(3):222-6

TSS for Ly6e-ps1:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr113752	Chr12:72667447-72667490 (+)	-80 bp