Gpx2-ps1 Pseudogene Detail

Summary

• Symbol
  Gpx2-ps1
• Name
  glutathione peroxidase 2, pseudogene 1

• Feature Type
  pseudogene
• IDs
  MGI:106627
  NCBI Gene: 14777
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr7:99913882-99914452 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, 54.34 cM
• Mapping Data
  4 experiments

Strain
Comparison

• SNPs within 2kb
  129 from dbSNP Build 142
• Strain Annotations
  19
• RFLP
  2

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_106627	pseudogene	Chr7:99913751-99914768 (+)
129S1/SvImJ	ENSMUSG00200050040	pseudogene	Chr7:86742727-86743297 (+)
A/J	ENSMUSG00195054852	pseudogene	Chr7:91248156-91248726 (+)
AKR/J	ENSMUSG00220052140	pseudogene	Chr7:84664804-84665374 (+)
BALB/cJ	ENSMUSG00180035185	pseudogene	Chr7:87921160-87921730 (+)
C3H/HeJ	ENSMUSG00175024857	pseudogene	Chr7:88571202-88571771 (+)
C57BL/6NJ	ENSMUSG00215035924	pseudogene	Chr7:87760052-87760622 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0009782	pseudogene	Chr12:71331832-71332135 (-)
CAST/EiJ	ENSTCUG00005053155	pseudogene	Chr7:91164811-91165327 (+)
CBA/J	ENSMUSG00210026091	pseudogene	Chr7:88424907-88425476 (+)
DBA/2J	ENSMUSG00185056980	pseudogene	Chr7:92746330-92746899 (+)
FVB/NJ	ENSMUSG00205037860	pseudogene	Chr7:88419289-88419859 (+)
JF1/MsJ	ENSUMUG00000052821	pseudogene	Chr7:97651323-97651893 (+)
LP/J	ENSMUSG00230044755	pseudogene	Chr7:98884485-98885055 (+)
NOD/ShiLtJ	ENSMUSG00190021948	pseudogene	Chr7:88700279-88700849 (+)
NZO/HlLtJ	ENSMUSG00225051000	pseudogene	Chr7:97062438-97063008 (+)
PWK/PhJ	ENSLUMG00010051128	pseudogene	Chr7:86889812-86890382 (+)
SPRET/EiJ	ENSMSPG00010013127	pseudogene	Chr7:88132405-88132972 (+)
WSB/EiJ	ENSIUOG00005010833	pseudogene	Chr7:89049160-89049730 (+)

Homology

• Gene Tree
  Gpx2-ps1
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  9 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Gpx2-ps1
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  27
• RefSeq
  1

• Ensembl
  ENSMUSG00000089987 (Evidence)
• NCBI Gene
  14777

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000089987	Ensembl Gene Model | MGI Sequence Detail	571	C57BL/6J
transcript	ENSMUST00000160622	Ensembl | MGI Sequence Detail	571	Not Applicable

Molecular
Reagents

• All nucleic 7

  Genomic 5

  cDNA 2

  
  

  Microarray probesets 1

Other
Accession IDs

MGD-MRK-35084, MGI:3034489

References

• Summaries
  All 20

  Phenotypes 9
• Earliest
  J:88307 Giometti CS, et al., The analysis of recessive lethal mutations in mice by using two-dimensional gel electrophoresis of liver proteins. Mutat Res. 1990 Sep;242(1):47-55
• Latest
  J:123187 Cohen-Barak O, et al., Stem cell transplantation demonstrates that Sox6 represses epsilon y globin expression in definitive erythropoiesis of adult mice. Exp Hematol. 2007 Mar;35(3):358-67

TSS for Gpx2-ps1:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr68108	Chr7:99913852-99913874 (+)	-19 bp