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Yipf3 Gene Detail
Summary
  • Symbol
    Yipf3
  • Name
    Yip1 domain family, member 3
  • Synonyms
    D17Wsu94e
  • Feature Type
    protein coding gene
  • IDs
    MGI:106280
    NCBI Gene: 28064
  • Alliance
    gene page
  • Transcription Start Sites
    3 TSS
Location &
Maps
more
  • Sequence Map
    Chr17:46559019-46563474 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 17, 22.90 cM
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    14 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_106280
 protein coding gene Chr17:46559006-46563474 (+)
129S1/SvImJ MGP_129S1SvImJ_G0023808
 protein coding gene Chr17:47294538-47298894 (+)
A/J MGP_AJ_G0023766
 protein coding gene Chr17:46158006-46162463 (+)
AKR/J MGP_AKRJ_G0023737
 protein coding gene Chr17:46492987-46497444 (+)
BALB/cJ MGP_BALBcJ_G0023770
 protein coding gene Chr17:46060193-46064650 (+)
C3H/HeJ MGP_C3HHeJ_G0023534
 protein coding gene Chr17:47224029-47228486 (+)
C57BL/6NJ MGP_C57BL6NJ_G0024213
 protein coding gene Chr17:49342097-49346554 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0021663
 protein coding gene Chr17:42961398-42966012 (+)
CAST/EiJ MGP_CASTEiJ_G0023015
 protein coding gene Chr17:47348119-47352576 (+)
CBA/J MGP_CBAJ_G0023510
 protein coding gene Chr17:51105634-51110091 (+)
DBA/2J MGP_DBA2J_G0023636
 protein coding gene Chr17:44947549-44952006 (+)
FVB/NJ MGP_FVBNJ_G0023603
 protein coding gene Chr17:44552249-44557486 (+)
LP/J MGP_LPJ_G0023717
 protein coding gene Chr17:47972218-47976675 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0023632
 protein coding gene Chr17:50673302-50677683 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0024258
 protein coding gene Chr17:46845988-46850445 (+)
PWK/PhJ MGP_PWKPhJ_G0022760
 protein coding gene Chr17:44265205-44269647 (+)
SPRET/EiJ MGP_SPRETEiJ_G0022575
 protein coding gene Chr17:43745748-43750160 (+)
WSB/EiJ MGP_WSBEiJ_G0023080
 protein coding gene Chr17:47396207-47400664 (+)



Homology
more
  • Human Ortholog
    YIPF3, Yip1 domain family member 3
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    YIPF3, Yip1 domain family member 3
  • Synonyms
    C6orf109, dJ337H4.3, FinGER3, KLIP1, Yip5b, YIPFbeta2
  • Links
    NCBI Gene ID: 25844
    neXtProt AC: NX_Q9GZM5
    UniProt: Q9GZM5

  • Chr Location
    6p21.1; chr6:43511832-43516985 (-)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    3 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    8
  • GO References
    3
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
DNA-templated transcription
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    712
  • Tissues
    2
  • cDNA Data
    95
  • Literature Summary
    1
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 28064 NCBI Gene Model | MGI Sequence Detail 4456 C57BL/6J ±  kb
transcript NM_001414050 RefSeq | MGI Sequence Detail 2064 ZRU/MplStud  
polypeptide Q3UDR8 UniProt | EBI | MGI Sequence Detail 347 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 97
    cDNA 96
    Primer pair 1

    Microarray probesets 3
Other
Accession IDs
less
MGD-MRK-33972
References
more
  • Summaries
    All 27
    Developmental Gene Expression 1
    Gene Ontology 3
    Phenotypes 3
  • Earliest
    J:50869 Ko MSH, et al., Genome-wide mapping of unselected transcripts from extraembryonic tissue of 7.5-day mouse embryos reveals enrichment in the t-complex and under-representation on the X chromosome. Hum Mol Genet. 1998 Nov;7(12):1967-78
  • Latest
    J:265628 Gaudet P, et al., Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief Bioinform. 2011 Sep;12(5):449-62
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/21/2023
MGI 6.22 		The Jackson Laboratory