Hmga2-ps1 Pseudogene Detail

Summary

• Symbol
  Hmga2-ps1
• Name
  high mobility group AT-hook 2, pseudogene 1
• Synonyms
  Hmgic-ps1, [y]i-c

• Feature Type
  pseudogene
  BioType Conflict
  
• IDs
  MGI:106023
  NCBI Gene: 15365
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr1:176662190-176663699 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, Syntenic
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  181 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_106023	pseudogene	Chr1:176662183-176663734 (-)
129S1/SvImJ	ENSMUSG00200023537	lncRNA gene	Chr1:174418290-174419831 (-)
A/J	ENSMUSG00195043610	lncRNA gene	Chr1:173855660-173857201 (-)
AKR/J	ENSMUSG00220033287	lncRNA gene	Chr1:173416896-173418437 (-)
BALB/cJ	ENSMUSG00180038604	lncRNA gene	Chr1:174069272-174070813 (-)
C3H/HeJ	ENSMUSG00175043903	lncRNA gene	Chr1:174245386-174246927 (-)
C57BL/6NJ	ENSMUSG00215032560	lncRNA gene	Chr1:173623626-173625177 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005047380	lncRNA gene	Chr1:172129421-172130952 (-)
CBA/J	ENSMUSG00210019047	lncRNA gene	Chr1:173892811-173894362 (-)
DBA/2J	ENSMUSG00185032388	lncRNA gene	Chr1:178511561-178513112 (-)
FVB/NJ	ENSMUSG00205035073	lncRNA gene	Chr1:173013307-173014848 (-)
JF1/MsJ	ENSUMUG00000022639	lncRNA gene	Chr1:177377725-177379273 (-)
LP/J	ENSMUSG00230033939	lncRNA gene	Chr1:178084388-178085929 (-)
NOD/ShiLtJ	ENSMUSG00190035824	lncRNA gene	Chr1:173931082-173932623 (-)
NZO/HlLtJ	ENSMUSG00225005261	lncRNA gene	Chr1:181661748-181663289 (-)
PWK/PhJ	ENSLUMG00010037001	lncRNA gene	Chr1:172631372-172632923 (-)
SPRET/EiJ	ENSMSPG00010036982	lncRNA gene	Chr1:176273255-176274793 (-)
WSB/EiJ	ENSIUOG00005011915	lncRNA gene	Chr1:172979474-172981015 (-)

Homology

• Gene Tree
  Hmga2-ps1
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  2
• Genomic Mutations
  2 involving Hmga2-ps1
• Find Mice (IMSR)
  0 strains or lines available

Expression

• cDNA Data
  3

• Other Mouse Links
  GEO

Sequences &
Gene Models

• All Sequences
  28
• RefSeq
  1

• Ensembl
  ENSMUSG00000121135 (Evidence)
• NCBI Gene
  15365

Representative Sequences			Length	Strain/Species
genomic	15365	NCBI Gene Model | MGI Sequence Detail	1510	C57BL/6J
transcript	NR_037996	RefSeq | MGI Sequence Detail	1510	ZRU/MplStud

Molecular
Reagents

• All nucleic 4

  Genomic 1

  cDNA 3

  
  

  Microarray probesets 2

Other
Accession IDs

MGD-MRK-33705, MGI:3647385

References

• Summaries
  All 15

  Phenotypes 2
• Earliest
  J:30649 Manfioletti G, et al., Isolation and characterization of the gene coding for murine high-mobility-group protein HMGI-C. Gene. 1995 Dec 29;167(1-2):249-53
• Latest
  J:223994 Zangrando J, et al., Identification of candidate long non-coding RNAs in response to myocardial infarction. BMC Genomics. 2014;15:460

TSS for Hmga2-ps1:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr15429	Chr1:176663701-176663742 (-)	-23 bp
Tssr15428	Chr1:176663504-176663517 (-)	188 bp