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H2-Pa Pseudogene Detail
Summary
  • Symbol
    H2-Pa
  • Name
    histocompatibility 2, P region alpha locus
Location &
Maps
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  • Sequence Map
    Chr17:34303575-34304797 bp, + strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 17, 17.98 cM
  • Mapping Data
    1 experiment
Strain
Comparison
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  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_105314
 pseudogene Chr17:34303575-34304826 (+)
129S1/SvImJ ENSMUSG00200054355
 pseudogene Chr17:30006674-30007896 (+)
A/J ENSMUSG00195046797
 pseudogene Chr17:30870806-30872028 (+)
AKR/J ENSMUSG00220053993
 pseudogene Chr17:29898450-29899672 (+)
BALB/cJ ENSMUSG00180045943
 pseudogene Chr17:30259602-30260827 (+)
C3H/HeJ ENSMUSG00175054159
 pseudogene Chr17:29784631-29785853 (+)
C57BL/6NJ ENSMUSG00215054536
 pseudogene Chr17:29846846-29848068 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0037186
 pseudogene Chr17:30416810-30417921 (+)
CAST/EiJ ENSTCUG00005052419
 pseudogene Chr17:30830190-30831415 (+)
CBA/J ENSMUSG00210051404
 pseudogene Chr17:29606733-29607955 (+)
DBA/2J ENSMUSG00185055783
 pseudogene Chr17:32278898-32280123 (+)
FVB/NJ ENSMUSG00205053731
 pseudogene Chr17:30135794-30137046 (+)
JF1/MsJ ENSUMUG00000057828
 pseudogene Chr17:31541100-31542322 (+)
LP/J ENSMUSG00230054786
 pseudogene Chr17:33405023-33406245 (+)
NOD/ShiLtJ ENSMUSG00190054381
 pseudogene Chr17:29758491-29759716 (+)
NZO/HlLtJ no annotation
PWK/PhJ ENSLUMG00010053408
 pseudogene Chr17:29384881-29386133 (+)
SPRET/EiJ ENSMSPG00010051340
 pseudogene Chr17:30528837-30530075 (+)
WSB/EiJ ENSIUOG00005051819
 pseudogene Chr17:30458998-30460223 (+)



Homology
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Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    597
Sequences &
Gene Models
less
  • All Sequences
    24
  • RefSeq
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000098241 Ensembl Gene Model | MGI Sequence Detail 1223 C57BL/6J ±  kb
transcript ENSMUST00000182803 Ensembl | MGI Sequence Detail 697 Not Applicable  
For the selected sequence
Molecular
Reagents
less
  • All nucleic 7
    Genomic 6
    Other 1

    Microarray probesets 1
Other
Accession IDs
less
MGD-MRK-32355
References
more
  • Summaries
    All 9
  • Earliest
    J:31418 Arimura Y, et al., Structure of novel rat major histocompatibility complex class II genes RT1.Ha and Hb. Immunogenetics. 1995;41(5):320-5
  • Latest
    J:63110 Allcock RJ, et al., The mouse as a model for the effects of MHC genes on human disease. Immunol Today. 2000 Jul;21(7):328-32
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
09/08/2026
MGI 6.24 		The Jackson Laboratory