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Bc1 Gene Detail
Summary
  • Symbol
    Bc1
  • Name
    brain cytoplasmic RNA 1
  • Synonyms
    Gm24367
Location &
Maps
more
  • Sequence Map
    Chr7:144468207-144468360 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 7, Syntenic
  • Mapping Data
    7 experiments
Strain
Comparison
more
  • SNPs within 2kb
    57 from dbSNP Build 142
  • Strain Annotations
    18
  • RFLP
    2
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_104905
 lncRNA gene Chr7:144468199-144468374 (+)
129S1/SvImJ ENSMUSG00200046884
 lncRNA gene Chr7:131032672-131032846 (+)
A/J ENSMUSG00195001782
 lncRNA gene Chr7:135516297-135516470 (+)
AKR/J ENSMUSG00220037050
 lncRNA gene Chr7:128993449-128993620 (+)
BALB/cJ ENSMUSG00180000898
 lncRNA gene Chr7:132206285-132206457 (+)
C3H/HeJ ENSMUSG00175004080
 lncRNA gene Chr7:132937325-132937499 (+)
C57BL/6NJ ENSMUSG00215000131
 lncRNA gene Chr7:132203615-132203787 (+)
CAROLI/EiJ no annotation
CAST/EiJ ENSTCUG00005002958
 lncRNA gene Chr7:135532388-135532564 (+)
CBA/J ENSMUSG00210003852
 lncRNA gene Chr7:132694816-132694989 (+)
DBA/2J ENSMUSG00185018394
 lncRNA gene Chr7:136973638-136973811 (+)
FVB/NJ ENSMUSG00205002183
 lncRNA gene Chr7:132601557-132601731 (+)
JF1/MsJ ENSUMUG00000002094
 lncRNA gene Chr7:142002056-142002228 (+)
LP/J ENSMUSG00230007965
 lncRNA gene Chr7:143135099-143135273 (+)
NOD/ShiLtJ ENSMUSG00190003979
 lncRNA gene Chr7:132802347-132802520 (+)
NZO/HlLtJ ENSMUSG00225021301
 lncRNA gene Chr7:141345679-141345852 (+)
PWK/PhJ ENSLUMG00010048233
 lncRNA gene Chr7:131171624-131171795 (+)
SPRET/EiJ ENSMSPG00010001012
 lncRNA gene Chr7:132737606-132737781 (+)
WSB/EiJ ENSIUOG00005000952
 lncRNA gene Chr7:133598061-133598239 (+)



Homology
less
  • Gene Tree
    Bc1
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    1 phenotype from 1 allele in 1 genetic background
    9 phenotype references
Inactivation of this untranslated locus results in subtle behavioral abnormalities.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    5
  • GO References
    3
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
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Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    623
  • Tissues
    17
  • cDNA Data
    1
  • Literature Summary
    4
Sequences &
Gene Models
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  • All Sequences
    23
  • RefSeq
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic 100568459 NCBI Gene Model | MGI Sequence Detail 154 C57BL/6J ±  kb
transcript NR_038088 RefSeq | MGI Sequence Detail 154 Not Specified  
For the selected sequence
Molecular
Reagents
less
  • All nucleic 7
    Genomic 3
    cDNA 1
    Primer pair 1
    Other 2
Other
Accession IDs
less
MGD-MRK-29059, MGI:5454144
References
more
  • Summaries
    All 22
    Developmental Gene Expression 4
    Gene Ontology 3
    Phenotypes 9
  • Earliest
    J:8364 Anzai K, et al., Isolation and sequencing of a genomic clone for mouse brain specific small RNA. J Neurochem. 1986 Sep;47(3):673-7
  • Latest
    J:344838 Sharma S, et al., Uncovering a mammalian neural-specific poly(A) binding protein with unique properties. Genes Dev. 2023 Aug 1;37(15-16):760-777
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
09/08/2026
MGI 6.24 		The Jackson Laboratory