Hmgb1-rs17 Pseudogene Detail

Summary

• Symbol
  Hmgb1-rs17
• Name
  high mobility group box 1, related sequence 17
• Synonyms
  Hmg1-rs17

• Feature Type
  pseudogene
• IDs
  MGI:104764
  NCBI Gene: 628431
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr8:33974224-33975195 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 8, 20.50 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  125 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_104764	pseudogene	Chr8:33974224-33975785 (+)
129S1/SvImJ	ENSMUSG00200022007	pseudogene	Chr8:29029669-29030640 (+)
A/J	ENSMUSG00195005758	pseudogene	Chr8:29545581-29546552 (+)
AKR/J	ENSMUSG00220026483	pseudogene	Chr8:29308105-29309076 (+)
BALB/cJ	ENSMUSG00180005889	pseudogene	Chr8:29088928-29089899 (+)
C3H/HeJ	ENSMUSG00175007145	pseudogene	Chr8:29246491-29247462 (+)
C57BL/6NJ	ENSMUSG00215011674	pseudogene	Chr8:29042503-29043474 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005024651	pseudogene	Chr8:29215657-29216625 (+)
CBA/J	ENSMUSG00210014635	pseudogene	Chr8:29074704-29075675 (+)
DBA/2J	ENSMUSG00185002443	pseudogene	Chr8:35000982-35001953 (+)
FVB/NJ	ENSMUSG00205004440	pseudogene	Chr8:28306021-28306992 (+)
JF1/MsJ	ENSUMUG00000008494	pseudogene	Chr8:36717827-36718798 (+)
LP/J	ENSMUSG00230015673	pseudogene	Chr8:38637148-38638119 (+)
NOD/ShiLtJ	ENSMUSG00190004849	pseudogene	Chr8:29122101-29123072 (+)
NZO/HlLtJ	ENSMUSG00225014900	pseudogene	Chr8:42255389-42256360 (+)
PWK/PhJ	ENSLUMG00010027643	pseudogene	Chr8:28953427-28954398 (+)
SPRET/EiJ	ENSMSPG00010017573	pseudogene	Chr8:29632740-29633702 (+)
WSB/EiJ	ENSIUOG00005011349	pseudogene	Chr8:29871060-29872031 (+)

Homology

• Gene Tree
  Hmgb1-rs17
  

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24
• RefSeq
  1

• Ensembl
  ENSMUSG00000109750 (Evidence)
• NCBI Gene
  628431

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000109750	Ensembl Gene Model | MGI Sequence Detail	972	C57BL/6J
transcript	ENSMUST00000210634	Ensembl | MGI Sequence Detail	972	Not Applicable

Molecular
Reagents

• All nucleic 2

  Genomic 1

  cDNA 1

  
  

  Microarray probesets 1

Other
Accession IDs

MGD-MRK-28055

References

• Summaries
  All 8
• Earliest
  J:21498 Ferrari S, et al., The mouse gene coding for high mobility group 1 protein (HMG1). J Biol Chem. 1994 Nov 18;269(46):28803-8

TSS for Hmgb1-rs17:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr76814	Chr8:33974218-33974231 (+)	1 bp