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Rbmy Gene Detail
Summary
  • Symbol
    Rbmy
  • Name
    RNA binding motif protein, Y chromosome
  • Synonyms
    RBM, Rbm1, Rbm1-rs1, Rbmy1a1, Rbmy1a1-rs1
  • Feature Type
    protein coding gene
  • IDs
    MGI:104732
    NCBI Gene: 19657
  • Alliance
Location &
Maps
more
  • Sequence Map
    ChrY:2830680-2841854 bp, + strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome Y, Syntenic
  • Mapping Data
    5 experiments
Strain
Comparison
more
  • SNPs within 2kb
    3 from dbSNP Build 142
  • Strain Annotations
    1
  • PCR
  • RFLP
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_104732
protein coding gene ChrY:2830680-2841858 (+)
129S1/SvImJ no annotation
A/J no annotation
AKR/J no annotation
BALB/cJ no annotation
C3H/HeJ no annotation
C57BL/6NJ no annotation
CAROLI/EiJ no annotation
CAST/EiJ no annotation
CBA/J no annotation
DBA/2J no annotation
FVB/NJ no annotation
LP/J no annotation
NOD/ShiLtJ no annotation
NZO/HlLtJ no annotation
PWK/PhJ no annotation
SPRET/EiJ no annotation
WSB/EiJ no annotation



Homology
more
  • Human Ortholog
    RBMY1B, RNA binding motif protein Y-linked family 1 member B
  • Vertebrate Orthologs
    2
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    RBMY1B, RNA binding motif protein Y-linked family 1 member B
  • Synonyms
    RBMY1D
  • Links
    NCBI Gene ID: 378948
    neXtProt AC: NX_A6NDE4
    UniProt: A6NDE4

  • Chr Location
    Yq11.223; chrY:21511338-21527212 (+)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    2 phenotype references
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell population proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
less
Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000094658 Ensembl Gene Model | MGI Sequence Detail 11175 C57BL/6J ±  kb
transcript ENSMUST00000171534 Ensembl | MGI Sequence Detail 1573 Not Applicable  
polypeptide ENSMUSP00000130080 Ensembl | MGI Sequence Detail 380 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    1 Sequence
Molecular
Reagents
less
  • All nucleic 23
    Genomic 8
    cDNA 9
    Primer pair 6

    Microarray probesets 5
Other
Accession IDs
less
MGD-MRK-26077, MGD-MRK-27095, MGI:104639
References
more
  • Summaries
    All 38
    Developmental Gene Expression 11
    Gene Ontology 4
    Phenotypes 2
  • Earliest
    J:24464 Ma K, et al., A Y chromosome gene family with RNA-binding protein homology: candidates for the azoospermia factor AZF controlling human spermatogenesis. Cell. 1993 Dec 31;75(7):1287-95
  • Latest
    J:329968 Kazi S, et al., MRNIP interacts with sex body chromatin to support meiotic progression, spermatogenesis, and male fertility in mice. FASEB J. 2022 Sep;36(9):e22479

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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last database update
01/24/2023
MGI 6.22
The Jackson Laboratory