Got2-ps1 Pseudogene Detail

Summary

• Symbol
  Got2-ps1
• Name
  glutamatic-oxaloacetic transaminase 2, mitochondrial, pseudogene 1

• Feature Type
  pseudogene
• IDs
  MGI:104721
  NCBI Gene: 14720
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr5:138362522-138363814 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, 77.04 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  94 from dbSNP Build 142
• Strain Annotations
  14

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_104721	pseudogene	Chr5:138361529-138363870 (-)
129S1/SvImJ	ENSMUSG00200047473	pseudogene	Chr5:132234651-132235943 (-)
A/J	ENSMUSG00195051076	pseudogene	Chr5:131767964-131769256 (-)
AKR/J	ENSMUSG00220050197	pseudogene	Chr5:131113325-131114617 (-)
BALB/cJ	ENSMUSG00180045752	pseudogene	Chr5:131864543-131865835 (-)
C3H/HeJ	ENSMUSG00175047794	pseudogene	Chr5:133792012-133793304 (-)
C57BL/6NJ	ENSMUSG00215049481	pseudogene	Chr5:131806214-131807506 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	ENSMUSG00210024187	pseudogene	Chr5:132609531-132610823 (-)
DBA/2J	ENSMUSG00185055520	pseudogene	Chr5:135624884-135626176 (-)
FVB/NJ	ENSMUSG00205049736	pseudogene	Chr5:131426440-131427732 (-)
JF1/MsJ	no annotation
LP/J	ENSMUSG00230049747	pseudogene	Chr5:139738329-139739621 (-)
NOD/ShiLtJ	ENSMUSG00190046964	pseudogene	Chr5:131564215-131565507 (-)
NZO/HlLtJ	ENSMUSG00225024076	pseudogene	Chr5:147291951-147293243 (-)
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	ENSIUOG00005038421	pseudogene	Chr5:134093634-134094924 (-)

Homology

• Gene Tree
  Got2-ps1
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  19
• RefSeq
  1

• Ensembl
  ENSMUSG00000080935 (Evidence)
• NCBI Gene
  14720

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000080935	Ensembl Gene Model | MGI Sequence Detail	1293	C57BL/6J
transcript	ENSMUST00000121655	Ensembl | MGI Sequence Detail	1293	Not Applicable

Molecular
Reagents

• All nucleic 2

  Genomic 2

Other
Accession IDs

MGD-MRK-27084

References

• Summaries
  All 6
• Earliest
  J:29508 Tsuzuki T, et al., Structural organization of the mouse mitochondrial aspartate aminotransferase gene. J Mol Biol. 1987 Nov 5;198(1):21-31
• Latest
  J:67270 Bradbury MW, et al., Mitochondrial aspartate aminotransferase: direction of a single protein with two distinct functions to two subcellular sites does not require alternative splicing of the mRNA. Biochem J. 2000 Feb 1;345 Pt 3:423-7

TSS for Got2-ps1:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr54099	Chr5:138363870-138363872 (-)	-57 bp