Rnu1b6 Gene Detail

Summary

• Symbol
  Rnu1b6
• Name
  U1b6 small nuclear RNA
• Synonyms
  U1b6

• Feature Type
  snRNA gene
• IDs
  MGI:104604
  NCBI Gene: 19847
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr3:96367340-96367505 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, 41.86 cM

Strain
Comparison

• SNPs within 2kb
  1 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_104604	snRNA gene	Chr3:96367340-96367505 (-)
129S1/SvImJ	ENSMUSG00200045627	snRNA gene	Chr3:93001045-93001210 (-)
A/J	ENSMUSG00195049603	snRNA gene	Chr3:93397330-93397495 (-)
AKR/J	ENSMUSG00220041180	snRNA gene	Chr3:91745130-91745295 (-)
BALB/cJ	ENSMUSG00180042129	snRNA gene	Chr3:93346215-93346380 (-)
C3H/HeJ	ENSMUSG00175030709	snRNA gene	Chr3:92955759-92955924 (-)
C57BL/6NJ	ENSMUSG00215038377	snRNA gene	Chr3:93722526-93722691 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005020463	snRNA gene	Chr3:93547166-93547331 (-)
CBA/J	ENSMUSG00210051463	snRNA gene	Chr3:93508789-93508954 (-)
DBA/2J	ENSMUSG00185047926	snRNA gene	Chr3:93963546-93963711 (-)
FVB/NJ	ENSMUSG00205050442	snRNA gene	Chr3:92617161-92617326 (-)
JF1/MsJ	ENSUMUG00000047577	snRNA gene	Chr3:92819178-92819343 (-)
LP/J	ENSMUSG00230045838	snRNA gene	Chr3:95932898-95933063 (-)
NOD/ShiLtJ	ENSMUSG00190047217	snRNA gene	Chr3:94061633-94061798 (-)
NZO/HlLtJ	ENSMUSG00225012282	snRNA gene	Chr3:98311466-98311631 (-)
PWK/PhJ	ENSLUMG00010029525	snRNA gene	Chr3:92811768-92811933 (-)
SPRET/EiJ	ENSMSPG00010046507	snRNA gene	Chr3:93109996-93110161 (-)
WSB/EiJ	ENSIUOG00005035109	snRNA gene	Chr3:93462585-93462750 (-)

Homology

• Gene Tree
  Rnu1b6
  

Expression

• Other Mouse Links
  GEO

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  1

• Ensembl
  ENSMUSG00000118677 (Evidence)
• NCBI Gene
  19847

Representative Sequences			Length	Strain/Species
genomic	19847	NCBI Gene Model | MGI Sequence Detail	166	C57BL/6J
transcript	NR_004413	RefSeq | MGI Sequence Detail	166	ZRU/MplStud

Molecular
Reagents

• All nucleic 4

  Genomic 4

Other
Accession IDs

MGD-MRK-26040

References

• Summaries
  All 6
• Earliest
  J:8312 Michael SK, et al., Characterization and mapping of DNA sequence homologous to mouse U1a1 snRNA: localization on chromosome 11 near the Dlb-1 and Re loci. Somat Cell Mol Genet. 1986 May;12(3):215-23
• Latest
  J:8579 Howard EF, et al., Functional, developmentally expressed genes for mouse U1a and U1b snRNAs contain both conserved and non-conserved transcription signals. Nucleic Acids Res. 1986 Dec 22;14(24):9811-25