Eif3s6-ps3 Pseudogene Detail

Summary

• Symbol
  Eif3s6-ps3
• Name
  eukaryotic translation initiation factor 3, subunit 6, pseudogene 3
• Synonyms
  Int6-ps3

• Feature Type
  pseudogene
• IDs
  MGI:103213
  NCBI Gene: 16344
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr17:16065542-16066890 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 17, 9.02 cM
• Mapping Data
  4 experiments

Strain
Comparison

• SNPs within 2kb
  198 from dbSNP Build 142
• Strain Annotations
  18
• RFLP
  2

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_103213	pseudogene	Chr17:16065504-16067065 (+)
129S1/SvImJ	ENSMUSG00200038426	pseudogene	Chr17:11676660-11678008 (+)
A/J	ENSMUSG00195038132	pseudogene	Chr17:12434154-12435502 (+)
AKR/J	ENSMUSG00220026333	pseudogene	Chr17:12095353-12096701 (+)
BALB/cJ	ENSMUSG00180017637	pseudogene	Chr17:11674584-11675932 (+)
C3H/HeJ	ENSMUSG00175042296	pseudogene	Chr17:11578363-11579711 (+)
C57BL/6NJ	ENSMUSG00215042700	pseudogene	Chr17:11773910-11775258 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005023328	pseudogene	Chr17:12093590-12094947 (+)
CBA/J	ENSMUSG00210042208	pseudogene	Chr17:11422396-11423744 (+)
DBA/2J	ENSMUSG00185039397	pseudogene	Chr17:13402731-13404079 (+)
FVB/NJ	ENSMUSG00205032539	pseudogene	Chr17:12084894-12086242 (+)
JF1/MsJ	ENSUMUG00000042090	pseudogene	Chr17:12964381-12965738 (+)
LP/J	ENSMUSG00230028180	pseudogene	Chr17:14800965-14802313 (+)
NOD/ShiLtJ	ENSMUSG00190038387	pseudogene	Chr17:11834876-11836224 (+)
NZO/HlLtJ	ENSMUSG00225048905	pseudogene	Chr17:16754543-16755891 (+)
PWK/PhJ	ENSLUMG00010020989	pseudogene	Chr17:11671976-11673333 (+)
SPRET/EiJ	ENSMSPG00010041300	pseudogene	Chr17:12981213-12982429 (+)
WSB/EiJ	ENSIUOG00005041581	pseudogene	Chr17:12425698-12427046 (+)

Homology

• Gene Tree
  Eif3s6-ps3
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  1

• Ensembl
  ENSMUSG00000116545 (Evidence)
• NCBI Gene
  16344

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000116545	Ensembl Gene Model | MGI Sequence Detail	1349	C57BL/6J
transcript	ENSMUST00000231929	Ensembl | MGI Sequence Detail	1349	Not Applicable

Molecular
Reagents

• All nucleic 2

  Genomic 1

  cDNA 1

Other
Accession IDs

MGD-MRK-24081

References

• Summaries
  All 6
• Earliest
  J:27401 Miyazaki S, et al., The chromosomal location of the mouse mammary tumor gene Int6 and related pseudogenes in the mouse genome. Genomics. 1995 Jun 10;27(3):420-4