Mif-ps1 Pseudogene Detail

Summary

• Symbol
  Mif-ps1
• Name
  macrophage migration inhibitory factor, pseudogene 1
• Synonyms
  Gm8762

• Feature Type
  pseudogene
• IDs
  MGI:103175
  NCBI Gene: 667686
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr1:136716920-136717258 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, 59.97 cM
• Mapping Data
  8 experiments

Strain
Comparison

• SNPs within 2kb
  127 from dbSNP Build 142
• Strain Annotations
  17
• RFLP
  2

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_103175	pseudogene	Chr1:136716806-136717310 (-)
129S1/SvImJ	ENSMUSG00200008496	pseudogene	Chr1:134346198-134346536 (-)
A/J	ENSMUSG00195016438	pseudogene	Chr1:133404714-133405052 (-)
AKR/J	ENSMUSG00220003776	pseudogene	Chr1:133295602-133295940 (-)
BALB/cJ	ENSMUSG00180011481	pseudogene	Chr1:133945279-133945617 (-)
C3H/HeJ	ENSMUSG00175006915	pseudogene	Chr1:133648743-133649081 (-)
C57BL/6NJ	ENSMUSG00215025830	pseudogene	Chr1:133647102-133647440 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005038314	pseudogene	Chr1:132593134-132593472 (-)
CBA/J	ENSMUSG00210014334	pseudogene	Chr1:133579036-133579374 (-)
DBA/2J	no annotation
FVB/NJ	ENSMUSG00205002488	pseudogene	Chr1:132914811-132915149 (-)
JF1/MsJ	ENSUMUG00000052414	pseudogene	Chr1:137072917-137073255 (-)
LP/J	ENSMUSG00230039594	pseudogene	Chr1:137479802-137480140 (-)
NOD/ShiLtJ	ENSMUSG00190002838	pseudogene	Chr1:133598635-133598973 (-)
NZO/HlLtJ	ENSMUSG00225020207	pseudogene	Chr1:141246813-141247151 (-)
PWK/PhJ	ENSLUMG00010002129	pseudogene	Chr1:132700357-132700695 (-)
SPRET/EiJ	ENSMSPG00010012301	pseudogene	Chr1:135505463-135505810 (-)
WSB/EiJ	ENSIUOG00005029365	pseudogene	Chr1:133365990-133366328 (-)

Homology

• Gene Tree
  Mif-ps1
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  2
• Radiation induced
  1
• Genomic Mutations
  3 involving Mif-ps1
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  1

• Ensembl
  ENSMUSG00000104360 (Evidence)
• NCBI Gene
  667686

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000104360	Ensembl Gene Model | MGI Sequence Detail	339	C57BL/6J
transcript	ENSMUST00000193486	Ensembl | MGI Sequence Detail	339	Not Applicable

Molecular
Reagents

• All nucleic 6

  Genomic 4

  cDNA 2

Other
Accession IDs

MGD-MRK-24043, MGI:3646806

References

• Summaries
  All 16

  Phenotypes 4
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:56825 Kozak CA, et al., Identification and genetic mapping of differentially expressed genes in mice differing at the If1 interferon regulatory locus. Mamm Genome. 1999 Sep;10(9):853-7

TSS for Mif-ps1:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr13947	Chr1:136717310-136717311 (-)	-53 bp