Mif-ps3 Pseudogene Detail

Summary

• Symbol
  Mif-ps3
• Name
  macrophage migration inhibitory factor, pseudogene 3
• Synonyms
  Gm6097

• Feature Type
  pseudogene
• IDs
  MGI:103164
  NCBI Gene: 619750
• Alliance
  genome feature page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr3:91931874-91932218 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, 40.14 cM, cytoband F1-F2
• Mapping Data
  3 experiments

Strain
Comparison

• SNPs within 2kb
  119 from dbSNP Build 142
• Strain Annotations
  19
• RFLP
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_103164	pseudogene	Chr3:91931795-91932340 (+)
129S1/SvImJ	ENSMUSG00200040384	pseudogene	Chr3:88794159-88794503 (+)
A/J	ENSMUSG00195053986	pseudogene	Chr3:88803836-88804180 (+)
AKR/J	ENSMUSG00220052369	pseudogene	Chr3:88019751-88020095 (+)
BALB/cJ	ENSMUSG00180048601	pseudogene	Chr3:88937027-88937374 (+)
C3H/HeJ	ENSMUSG00175048630	pseudogene	Chr3:88736442-88736786 (+)
C57BL/6NJ	ENSMUSG00215050861	pseudogene	Chr3:89175701-89176045 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0009178	pseudogene	Chr1:75564296-75564643 (+)
CAST/EiJ	ENSTCUG00005048081	pseudogene	Chr3:89068700-89069036 (+)
CBA/J	ENSMUSG00210048273	pseudogene	Chr3:88856265-88856609 (+)
DBA/2J	ENSMUSG00185053653	pseudogene	Chr3:88992086-88992430 (+)
FVB/NJ	ENSMUSG00205050148	pseudogene	Chr3:87787051-87787395 (+)
JF1/MsJ	ENSUMUG00000053721	pseudogene	Chr3:88549125-88549479 (+)
LP/J	ENSMUSG00230036109	pseudogene	Chr3:91017419-91017763 (+)
NOD/ShiLtJ	ENSMUSG00190050117	pseudogene	Chr3:89194126-89194473 (+)
NZO/HlLtJ	ENSMUSG00225012589	pseudogene	Chr3:93776113-93776457 (+)
PWK/PhJ	ENSLUMG00010052980	pseudogene	Chr3:88669007-88669351 (+)
SPRET/EiJ	ENSMSPG00010050693	pseudogene	Chr3:89107081-89107418 (+)
WSB/EiJ	ENSIUOG00005050919	pseudogene	Chr3:89306264-89306608 (+)

Homology

• Gene Tree
  Mif-ps3
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Mif-ps3
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  25
• RefSeq
  1

• Ensembl
  ENSMUSG00000082826 (Evidence)
• NCBI Gene
  619750

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000082826	Ensembl Gene Model | MGI Sequence Detail	345	C57BL/6J
transcript	ENSMUST00000118636	Ensembl | MGI Sequence Detail	345	Not Applicable

Molecular
Reagents

• All nucleic 4

  Genomic 3

  cDNA 1

Other
Accession IDs

MGD-MRK-24030, MGI:3648400

References

• Summaries
  All 14

  Diseases 1

  Phenotypes 4
• Earliest
  J:25567 Kozak CA, et al., Genomic cloning of mouse MIF (macrophage inhibitory factor) and genetic mapping of the human and mouse expressed gene and nine mouse pseudogenes. Genomics. 1995 Jun 10;27(3):405-11
• Latest
  J:302829 Lu J, et al., Mouse models for human hyperuricaemia: a critical review. Nat Rev Rheumatol. 2019 Jul;15(7):413-426

TSS for Mif-ps3:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr30276	Chr3:91931788-91931831 (+)	-64 bp
Tssr30277	Chr3:91931835-91931846 (+)	-33 bp
Tssr30278	Chr3:91931853-91931868 (+)	-13 bp