Pou2f3-rs1 Pseudogene Detail

Summary

• Symbol
  Pou2f3-rs1
• Name
  POU domain, class 2, transcription factor 3, related sequence 1
• Synonyms
  Otf11-rs1

• Feature Type
  pseudogene
• IDs
  MGI:103144
  NCBI Gene: 671141
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr1:106815582-106816627 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, 50.34 cM
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  158 from dbSNP Build 142
• Strain Annotations
  19
• RFLP
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_103144	pseudogene	Chr1:106814444-106816627 (-)
129S1/SvImJ	ENSMUSG00200000565	pseudogene	Chr1:104120578-104121626 (-)
A/J	ENSMUSG00195007976	pseudogene	Chr1:103599695-103600740 (-)
AKR/J	ENSMUSG00220000279	pseudogene	Chr1:103691656-103692701 (-)
BALB/cJ	ENSMUSG00180000463	pseudogene	Chr1:103885526-103886571 (-)
C3H/HeJ	ENSMUSG00175000586	pseudogene	Chr1:103814763-103815808 (-)
C57BL/6NJ	ENSMUSG00215007661	pseudogene	Chr1:103810624-103811669 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0009225	pseudogene	Chr1:99542986-99545174 (-)
CAST/EiJ	ENSTCUG00005002899	pseudogene	Chr1:103142154-103143227 (-)
CBA/J	ENSMUSG00210000193	pseudogene	Chr1:103694892-103695937 (-)
DBA/2J	ENSMUSG00185008576	pseudogene	Chr1:108143821-108144869 (-)
FVB/NJ	ENSMUSG00205008790	pseudogene	Chr1:102999103-103000151 (-)
JF1/MsJ	ENSUMUG00000000226	pseudogene	Chr1:106720737-106721797 (-)
LP/J	ENSMUSG00230000278	pseudogene	Chr1:107406567-107407615 (-)
NOD/ShiLtJ	ENSMUSG00190000649	pseudogene	Chr1:103754264-103755309 (-)
NZO/HlLtJ	ENSMUSG00225000404	pseudogene	Chr1:111289364-111290415 (-)
PWK/PhJ	ENSLUMG00010000277	pseudogene	Chr1:103128054-103129126 (-)
SPRET/EiJ	ENSMSPG00010000529	pseudogene	Chr1:105401670-105402749 (-)
WSB/EiJ	ENSIUOG00005001020	pseudogene	Chr1:103499865-103500922 (-)

Homology

• Gene Tree
  Pou2f3-rs1
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  2
• Radiation induced
  1
• Genomic Mutations
  3 involving Pou2f3-rs1
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24
• RefSeq
  2

• Ensembl
  ENSMUSG00000083613 (Evidence)
• NCBI Gene
  671141

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000083613	Ensembl Gene Model | MGI Sequence Detail	1046	C57BL/6J
transcript	ENSMUST00000120271	Ensembl | MGI Sequence Detail	1046	Not Applicable

Molecular
Reagents

• All nucleic 2

  Genomic 1

  cDNA 1

Other
Accession IDs

MGD-MRK-13068, MGD-MRK-24010, MGI:3643191

References

• Summaries
  All 11

  Phenotypes 4
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:4013 Goldsborough AS, et al., Cloning, chromosomal localization and expression pattern of the POU domain gene Oct-11. Nucleic Acids Res. 1993 Jan 11;21(1):127-34