Pafah1b1-ps1 Pseudogene Detail

Summary

• Symbol
  Pafah1b1-ps1
• Name
  platelet-activating factor acetylhydrolase, isoform 1b, beta1 subunit, pseudogene 1
• Synonyms
  Lis3, Mdsh3, Pafaha-ps1

• Feature Type
  pseudogene
• IDs
  MGI:103115
  NCBI Gene: 18473
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr3:96314833-96316375 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, 41.82 cM
• Mapping Data
  4 experiments

Strain
Comparison

• SNPs within 2kb
  169 from dbSNP Build 142
• Strain Annotations
  19
• PCR
  1
• RFLP
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_103115	pseudogene	Chr3:96314693-96316780 (-)
129S1/SvImJ	ENSMUSG00200045488	pseudogene	Chr3:92948199-92949741 (-)
A/J	ENSMUSG00195048196	pseudogene	Chr3:93344459-93346001 (-)
AKR/J	ENSMUSG00220040895	pseudogene	Chr3:91692621-91694163 (-)
BALB/cJ	ENSMUSG00180040871	pseudogene	Chr3:93293387-93294929 (-)
C3H/HeJ	ENSMUSG00175032632	pseudogene	Chr3:92902892-92904434 (-)
C57BL/6NJ	ENSMUSG00215040071	pseudogene	Chr3:93670016-93671558 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0010974	pseudogene	Chr3:90454348-90455605 (-)
CAST/EiJ	ENSTCUG00005020152	pseudogene	Chr3:93494285-93495827 (-)
CBA/J	ENSMUSG00210051506	pseudogene	Chr3:93455910-93457452 (-)
DBA/2J	ENSMUSG00185047300	pseudogene	Chr3:93911037-93912579 (-)
FVB/NJ	ENSMUSG00205050569	pseudogene	Chr3:92564299-92565841 (-)
JF1/MsJ	ENSUMUG00000047980	pseudogene	Chr3:92767466-92769006 (-)
LP/J	ENSMUSG00230045725	pseudogene	Chr3:95880055-95881597 (-)
NOD/ShiLtJ	ENSMUSG00190046901	pseudogene	Chr3:94008742-94010284 (-)
NZO/HlLtJ	ENSMUSG00225012263	pseudogene	Chr3:98255476-98257018 (-)
PWK/PhJ	ENSLUMG00010032020	pseudogene	Chr3:92760424-92761964 (-)
SPRET/EiJ	ENSMSPG00010045798	pseudogene	Chr3:93058104-93059252 (-)
WSB/EiJ	ENSIUOG00005031105	pseudogene	Chr3:93410056-93411598 (-)

Homology

• Gene Tree
  Pafah1b1-ps1
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Pafah1b1-ps1
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• Literature Summary
  1

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24
• RefSeq
  1

• Ensembl
  ENSMUSG00000097041 (Evidence)
• NCBI Gene
  18473

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000097041	Ensembl Gene Model | MGI Sequence Detail	1543	C57BL/6J
transcript	ENSMUST00000181263	Ensembl | MGI Sequence Detail	1046	Not Applicable

Molecular
Reagents

• All nucleic 5

  Genomic 2

  cDNA 1

  Primer pair 1

  Other 1

Other
Accession IDs

MGD-MRK-23979

References

• Summaries
  All 15

  Developmental Gene Expression 1

  Diseases 1

  Phenotypes 4
• Earliest
  J:22395 Peterfy M, et al., Lissencephaly-1 is one of the most conserved proteins between mouse and human: a single amino-acid difference in 410 residues. Gene. 1994 Dec 15;150(2):415-6
• Latest
  J:302829 Lu J, et al., Mouse models for human hyperuricaemia: a critical review. Nat Rev Rheumatol. 2019 Jul;15(7):413-426