Fau-ps2 Pseudogene Detail

Summary

• Symbol
  Fau-ps2
• Name
  Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed (fox derived), pseudogene 2

• Feature Type
  pseudogene
• IDs
  MGI:103018
  NCBI Gene: 14111
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr11:3146390-3146727 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, 2.24 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  65 from dbSNP Build 142
• Strain Annotations
  25

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_103018	pseudogene	Chr11:3146390-3146824 (-)
129S1/SvImJ	ENSMUSG00200035130	pseudogene	Chr11:99332-99702 (-)
A/J	ENSMUSG00195024666	pseudogene	Chr11:6733-7103 (-)
AKR/J	ENSMUSG00220009292	pseudogene	Chr11:19877-20247 (-)
BALB/cJ	ENSMUSG00180029669	pseudogene	Chr11:29744-30114 (-)
C3H/HeJ	ENSMUSG00175010212	pseudogene	Chr11:19563-19933 (-)
C57BL/6NJ	ENSMUSG00215034327	pseudogene	Chr11:29878-30248 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0009469	pseudogene	Chr11:24404-24782 (-)
CAST/EiJ	ENSTCUG00005039206	pseudogene	Chr11:115406-115776 (-)
CBA/J	ENSMUSG00210018447	pseudogene	Chr11:19314-19684 (-)
DBA/2J	ENSMUSG00185019279	pseudogene	Chr11:116917-117287 (-)
FVB/NJ	no annotation
JF1/MsJ	ENSUMUG00000046213	pseudogene	Chr11:261812-262182 (-)
LP/J	ENSMUSG00230007370	pseudogene	Chr14:432477-432847 (-)
LP/J	ENSMUSG00230035768	pseudogene	Chr11:1182617-1182987 (-)
LP/J	ENSMUSG00230003923	pseudogene	Chr2:1430259-1430628 (-)
NOD/ShiLtJ	ENSMUSG00190043313	pseudogene	Chr11:6634-7004 (-)
NZO/HlLtJ	ENSMUSG00225035142	pseudogene	Chr15:1828053-1828423 (+)
NZO/HlLtJ	ENSMUSG00225027232	pseudogene	Chr19:705279-705649 (-)
NZO/HlLtJ	ENSMUSG00225000049	pseudogene	Chr2:2916378-2916748 (+)
NZO/HlLtJ	ENSMUSG00225013778	pseudogene	Chr10:5082882-5083252 (+)
NZO/HlLtJ	ENSMUSG00225026240	pseudogene	Chr11:3239587-3239957 (-)
NZO/HlLtJ	ENSMUSG00225026475	pseudogene	Chr11:38966-39336 (-)
PWK/PhJ	ENSLUMG00010019210	pseudogene	Chr11:7176-7546 (-)
SPRET/EiJ	ENSMSPG00010008704	pseudogene	Chr11:91183-91549 (-)
WSB/EiJ	ENSIUOG00005007568	pseudogene	Chr11:20568-20938 (-)

Homology

• Gene Tree
  Fau-ps2
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  30
• RefSeq
  1

• Ensembl
  ENSMUSG00000082658 (Evidence)
• NCBI Gene
  14111

Representative Sequences			Length	Strain/Species
genomic	14111	NCBI Gene Model | MGI Sequence Detail	338	C57BL/6J

Molecular
Reagents

• All nucleic 2

  Genomic 2

Other
Accession IDs

MGD-MRK-23855, MGI:3650735

References

• Summaries
  All 7
• Earliest
  J:22828 Casteels D, et al., The mouse Fau gene: genomic structure, chromosomal localization, and characterization of two retropseudogenes. Genomics. 1995 Jan 1;25(1):291-4

TSS for Fau-ps2:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr106452	Chr11:3148517-3148561 (-)	-1,812 bp