Mcpt-ps1 Pseudogene Detail

Summary

• Symbol
  Mcpt-ps1
• Name
  mast cell protease, pseudogene 1
• Synonyms
  MMCP-(Y)1

• Feature Type
  pseudogene
• IDs
  MGI:102769
  NCBI Gene: 17223
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr14:56187520-56189798 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 14, 28.19 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  254 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_102769	pseudogene	Chr14:56187266-56189828 (-)
129S1/SvImJ	ENSMUSG00200043678	pseudogene	Chr14:44775034-44777576 (-)
A/J	ENSMUSG00195038762	pseudogene	Chr14:44991784-44994327 (-)
AKR/J	ENSMUSG00220037179	pseudogene	Chr14:44319664-44322206 (-)
BALB/cJ	ENSMUSG00180052938	pseudogene	Chr14:44615479-44618021 (-)
C3H/HeJ	ENSMUSG00175052538	pseudogene	Chr14:46297802-46300343 (-)
C57BL/6NJ	ENSMUSG00215049672	pseudogene	Chr14:44510560-44513101 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005050498	pseudogene	Chr14:46287488-46289999 (-)
CBA/J	ENSMUSG00210046580	pseudogene	Chr14:44978355-44980896 (-)
DBA/2J	ENSMUSG00185056186	pseudogene	Chr14:50044897-50047407 (-)
FVB/NJ	ENSMUSG00205046892	pseudogene	Chr14:44381216-44383759 (-)
JF1/MsJ	ENSUMUG00000050528	pseudogene	Chr14:61271484-61274030 (-)
LP/J	ENSMUSG00230053414	pseudogene	Chr14:62140871-62143413 (-)
NOD/ShiLtJ	ENSMUSG00190048913	pseudogene	Chr14:44744587-44747129 (-)
NZO/HlLtJ	ENSMUSG00225046977	pseudogene	Chr14:52431237-52433778 (-)
PWK/PhJ	ENSLUMG00010049489	pseudogene	Chr14:44200986-44203527 (-)
SPRET/EiJ	ENSMSPG00010048564	pseudogene	Chr14:47595706-47598237 (-)
WSB/EiJ	ENSIUOG00005044598	pseudogene	Chr14:44185125-44187670 (-)

Homology

• Gene Tree
  Mcpt-ps1
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Mcpt-ps1
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24
• RefSeq
  1

• Ensembl
  ENSMUSG00000115592 (Evidence)
• NCBI Gene
  17223

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000115592	Ensembl Gene Model | MGI Sequence Detail	2279	C57BL/6J
transcript	ENSMUST00000228685	Ensembl | MGI Sequence Detail	691	Not Applicable

Molecular
Reagents

• All nucleic 1

  cDNA 1

  
  

  Microarray probesets 2

Other
Accession IDs

MGD-MRK-19676

References

• Summaries
  All 10

  Phenotypes 2
• Earliest
  J:22087 Huang R, et al., Genes for mast-cell serine protease and their molecular evolution. Immunogenetics. 1994;40(6):397-414

TSS for Mcpt-ps1:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr4438	Chr14:56188804-56188805 (-)	993 bp